Atomistry » Cadmium » PDB 4evc-4l1l » 4kdd
Atomistry »
  Cadmium »
    PDB 4evc-4l1l »
      4kdd »

Cadmium in PDB 4kdd: Structure of Mycobacterium Tuberculosis Ribosome Recycling Factor in Presence of Detergent

Protein crystallography data

The structure of Structure of Mycobacterium Tuberculosis Ribosome Recycling Factor in Presence of Detergent, PDB code: 4kdd was solved by M.Selvaraj, A.Govindan, A.Seshadri, B.Dubey, U.Varshney, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.70 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.370, 33.720, 61.510, 90.00, 112.84, 90.00
R / Rfree (%) 24.9 / 27

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Structure of Mycobacterium Tuberculosis Ribosome Recycling Factor in Presence of Detergent (pdb code 4kdd). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Structure of Mycobacterium Tuberculosis Ribosome Recycling Factor in Presence of Detergent, PDB code: 4kdd:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 4kdd

Go back to Cadmium Binding Sites List in 4kdd
Cadmium binding site 1 out of 2 in the Structure of Mycobacterium Tuberculosis Ribosome Recycling Factor in Presence of Detergent


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of Mycobacterium Tuberculosis Ribosome Recycling Factor in Presence of Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:10.7
occ:1.00
OE1 A:GLU14 2.2 14.3 1.0
OE2 A:GLU10 2.3 16.0 1.0
O A:HOH308 2.3 7.2 1.0
CD A:GLU14 3.3 13.2 1.0
CD A:GLU10 3.3 15.1 1.0
CG A:GLU10 3.6 13.5 1.0
OE2 A:GLU14 3.6 14.0 1.0
OH A:TYR167 4.1 17.5 1.0
OE1 A:GLU10 4.4 14.2 1.0
O A:HOH303 4.4 4.8 1.0
CG A:GLU14 4.5 13.6 1.0

Cadmium binding site 2 out of 2 in 4kdd

Go back to Cadmium Binding Sites List in 4kdd
Cadmium binding site 2 out of 2 in the Structure of Mycobacterium Tuberculosis Ribosome Recycling Factor in Presence of Detergent


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of Mycobacterium Tuberculosis Ribosome Recycling Factor in Presence of Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd202

b:30.7
occ:0.30
OE2 A:GLU108 2.7 33.7 1.0
OE1 A:GLU108 2.8 30.7 1.0
CD A:GLU108 3.1 32.3 1.0
O A:HOH487 3.5 36.4 1.0
CG A:GLU108 4.6 32.1 1.0
CB A:GLU107 5.0 32.7 1.0

Reference:

M.Selvaraj, A.Govindan, A.Seshadri, B.Dubey, U.Varshney, M.Vijayan. Molecular Flexibility of Mycobacterium Tuberculosis Ribosome Recycling Factor and Its Functional Consequences: An Exploration Involving Mutants. J.Biosci. V. 38 845 2013.
ISSN: ISSN 0250-4774
PubMed: 24296887
Page generated: Sat Dec 12 08:25:02 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy