Atomistry » Cadmium » PDB 4l8q-4qdp » 4mbu
Atomistry »
  Cadmium »
    PDB 4l8q-4qdp »
      4mbu »

Cadmium in PDB 4mbu: Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50

Protein crystallography data

The structure of Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50, PDB code: 4mbu was solved by P.Srivastava, Y.Khandokar, J.K.Forwood, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.15 / 2.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 97.490, 78.860, 66.010, 90.00, 111.95, 90.00
R / Rfree (%) 18.5 / 22.3

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50 (pdb code 4mbu). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 8 binding sites of Cadmium where determined in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50, PDB code: 4mbu:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Cadmium binding site 1 out of 8 in 4mbu

Go back to Cadmium Binding Sites List in 4mbu
Cadmium binding site 1 out of 8 in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:31.3
occ:1.00
O A:HOH430 2.6 38.6 1.0
SG A:CYS4 2.8 20.0 1.0
O A:HOH425 3.0 33.1 1.0
O A:HOH370 3.2 20.5 1.0
CB A:CYS4 3.3 16.1 1.0
O A:HOH434 3.4 37.6 1.0
CD A:CD203 3.4 22.5 1.0
O A:HOH406 3.4 41.7 1.0
O A:HOH360 3.9 28.5 1.0
CA A:CYS4 4.8 19.4 1.0

Cadmium binding site 2 out of 8 in 4mbu

Go back to Cadmium Binding Sites List in 4mbu
Cadmium binding site 2 out of 8 in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd202

b:26.7
occ:1.00
O A:HOH367 2.4 20.8 1.0
OE2 A:GLU124 2.5 37.3 1.0
OE1 A:GLU124 2.9 34.4 1.0
CD A:GLU124 3.0 31.7 1.0
O A:HOH426 4.0 30.0 1.0
CG A:GLU124 4.5 25.9 1.0
O A:HOH420 5.0 31.1 1.0

Cadmium binding site 3 out of 8 in 4mbu

Go back to Cadmium Binding Sites List in 4mbu
Cadmium binding site 3 out of 8 in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd203

b:22.5
occ:1.00
SG A:CYS4 2.7 20.0 1.0
O A:HOH370 2.9 20.5 1.0
CB A:CYS4 3.4 16.1 1.0
CD A:CD201 3.4 31.3 1.0
O A:HOH406 3.9 41.7 1.0
N A:CYS4 4.0 19.1 1.0
CA A:CYS4 4.3 19.4 1.0
O A:HOH301 4.4 12.8 1.0

Cadmium binding site 4 out of 8 in 4mbu

Go back to Cadmium Binding Sites List in 4mbu
Cadmium binding site 4 out of 8 in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd204

b:4.1
occ:0.44
ND1 A:HIS137 2.5 3.9 1.0
O A:HOH368 3.0 6.9 1.0
O A:HOH369 3.0 12.4 1.0
CG A:HIS137 3.5 7.7 1.0
CE1 A:HIS137 3.5 6.7 1.0
CB A:HIS137 3.7 3.9 1.0
O1 A:PO4206 4.1 17.1 0.5
O2 A:PO4206 4.3 17.1 0.5
NE2 A:HIS137 4.6 11.1 1.0
OH A:TYR157 4.6 13.7 1.0
CD2 A:HIS137 4.6 3.9 1.0
P A:PO4206 4.9 14.1 0.5
O A:HOH315 4.9 13.5 1.0

Cadmium binding site 5 out of 8 in 4mbu

Go back to Cadmium Binding Sites List in 4mbu
Cadmium binding site 5 out of 8 in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd205

b:19.0
occ:0.56
O A:GLY118 2.5 17.5 1.0
O A:HOH328 2.5 14.7 1.0
O A:HOH336 2.9 24.8 1.0
C A:GLY118 3.6 14.9 1.0
N A:GLY118 4.0 12.5 1.0
CA A:GLY118 4.1 14.3 1.0
O A:HIS82 4.2 7.8 1.0
OE2 A:GLU81 4.3 23.1 1.0
CB A:SER83 4.5 19.1 1.0
N A:ILE119 4.7 13.6 1.0
O A:HOH436 4.8 42.9 1.0
CA A:SER83 4.9 13.3 1.0
O A:ALA26 4.9 20.5 1.0
CA A:ILE119 5.0 5.0 1.0

Cadmium binding site 6 out of 8 in 4mbu

Go back to Cadmium Binding Sites List in 4mbu
Cadmium binding site 6 out of 8 in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd201

b:29.3
occ:0.79
O B:HOH329 2.6 23.0 1.0
O B:HOH390 2.7 36.5 1.0
O B:HOH406 2.8 30.6 1.0
SG B:CYS4 2.8 24.2 1.0
O B:HOH332 3.1 20.5 1.0
CB B:CYS4 3.3 15.8 1.0
O B:HOH389 3.3 29.6 1.0
CD B:CD202 3.4 28.4 1.0
O B:HOH342 4.4 29.4 1.0
CA B:CYS4 4.8 20.0 1.0
O B:HOH375 5.0 22.9 1.0

Cadmium binding site 7 out of 8 in 4mbu

Go back to Cadmium Binding Sites List in 4mbu
Cadmium binding site 7 out of 8 in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd202

b:28.4
occ:1.00
O B:HOH375 2.8 22.9 1.0
SG B:CYS4 2.8 24.2 1.0
O B:HOH332 2.9 20.5 1.0
CB B:CYS4 3.4 15.8 1.0
CD B:CD201 3.4 29.3 0.8
N B:CYS4 4.1 18.7 1.0
CA B:CYS4 4.4 20.0 1.0

Cadmium binding site 8 out of 8 in 4mbu

Go back to Cadmium Binding Sites List in 4mbu
Cadmium binding site 8 out of 8 in the Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structure of N-Acetyltransferase From Staphylococcus Aureus MU50 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd203

b:28.7
occ:0.53
O B:HOH336 2.4 17.9 1.0
O B:GLY118 2.5 16.5 1.0
O B:HOH367 2.8 30.4 1.0
O B:HOH380 3.1 27.4 1.0
C B:GLY118 3.6 14.0 1.0
N B:GLY118 4.0 14.0 1.0
CA B:GLY118 4.1 8.9 1.0
OG B:SER83 4.2 25.5 1.0
O B:HIS82 4.3 12.1 1.0
OE2 B:GLU81 4.4 19.8 1.0
N B:ILE119 4.7 11.4 1.0
O B:ALA26 4.9 21.1 1.0
CA B:ILE119 5.0 10.3 1.0

Reference:

P.Srivastava, Y.Khandokar, J.K.Forwood. Expression,Purification and X-Ray Crystallography of N-Acetyltransferase From Staphylococcus Aureus MU50 To Be Published.
Page generated: Sat Dec 12 08:25:11 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy