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Cadmium in PDB 4o5u: Crystal Structure of Alkylhydroperoxide Reductase Subunit F From E. Coli at 2.65 Ang Resolution

Protein crystallography data

The structure of Crystal Structure of Alkylhydroperoxide Reductase Subunit F From E. Coli at 2.65 Ang Resolution, PDB code: 4o5u was solved by N.Kamariah, P.V.Dip, M.S.S.Manimekalai, G.Gruber, F.Eisenhaber, B.Eisenhaber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.82 / 2.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 106.698, 59.598, 123.715, 90.00, 113.68, 90.00
R / Rfree (%) 17.2 / 22

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Alkylhydroperoxide Reductase Subunit F From E. Coli at 2.65 Ang Resolution (pdb code 4o5u). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Alkylhydroperoxide Reductase Subunit F From E. Coli at 2.65 Ang Resolution, PDB code: 4o5u:

Cadmium binding site 1 out of 1 in 4o5u

Go back to Cadmium Binding Sites List in 4o5u
Cadmium binding site 1 out of 1 in the Crystal Structure of Alkylhydroperoxide Reductase Subunit F From E. Coli at 2.65 Ang Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Alkylhydroperoxide Reductase Subunit F From E. Coli at 2.65 Ang Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd610

b:0.0
occ:1.00
HE2 A:HIS85 2.6 72.5 1.0
HD1 A:HIS130 3.0 0.4 1.0
NE2 A:HIS85 3.2 60.4 1.0
ND1 A:HIS130 3.4 95.4 1.0
HB2 A:HIS130 3.6 0.5 1.0
HE1 A:HIS85 3.7 73.3 1.0
CE1 A:HIS85 3.8 61.1 1.0
CG A:HIS130 4.0 91.6 1.0
CE1 A:HIS130 4.0 97.3 1.0
CD2 A:HIS85 4.1 59.1 1.0
HE1 A:HIS130 4.2 0.7 1.0
CB A:HIS130 4.3 84.6 1.0
O A:SER128 4.4 67.8 1.0
HD2 A:HIS85 4.4 70.9 1.0
HA A:HIS130 4.5 92.2 1.0
NE2 A:HIS130 4.8 96.9 1.0
CD2 A:HIS130 4.8 94.7 1.0
ND1 A:HIS85 4.9 60.2 1.0
CA A:HIS130 4.9 76.8 1.0

Reference:

P.V.Dip, N.Kamariah, M.S.S.Manimekalai, W.Nartey, A.M.Balakrishna, F.Eisenhaber, B.Eisenhaber, G.Gruber. Structure, Mechanism and Ensemble Formation of the Alkylhydroperoxide Reductase Subunits Ahpc and Ahpf From Escherichia Coli Acta Crystallogr.,Sect.D V. 70 2848 2014.
ISSN: ISSN 0907-4449
DOI: 10.1107/S1399004714019233
Page generated: Sat Dec 12 08:25:23 2020

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