Cadmium in PDB 4ogq: Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex

Enzymatic activity of Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex

All present enzymatic activity of Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex:
1.10.9.1;

Protein crystallography data

The structure of Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex, PDB code: 4ogq was solved by S.S.Hasan, W.A.Cramer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	39.57 / 2.50
*Space group*	P 6₁ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	159.228, 159.228, 365.879, 90.00, 90.00, 120.00
*R / R_free (%)*	20.1 / 23.2

Other elements in 4ogq:

The structure of Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Iron	(Fe)	6 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex (pdb code 4ogq). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex, PDB code: 4ogq:

Cadmium binding site 1 out of 1 in 4ogq

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Cadmium Binding Sites List in 4ogq

Cadmium binding site 1 out of 1 in the Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex

Mono view

Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
C:Cd302 b:0.7 occ:0.52	NE2	C:HIS143	2.9	64.0	1.0
	OE1	A:GLU75	2.9	0.3	1.0
	O	C:LYS140	3.4	83.6	1.0
	CE1	C:HIS143	3.7	61.5	1.0
	CD	A:GLU75	3.8	80.1	1.0
	CD2	C:HIS143	3.8	60.4	1.0
	OE2	A:GLU75	4.0	95.6	1.0
	C	C:LYS140	4.3	77.5	1.0
	CA	C:LYS140	4.3	79.0	1.0
	CB	C:LYS140	4.4	85.4	1.0
	CG	C:LYS140	4.5	0.8	1.0
	O	A:ASN74	4.8	69.5	1.0
	ND1	C:HIS143	4.8	65.2	1.0
	CG	C:HIS143	4.9	70.0	1.0

Reference:

S.S.Hasan, W.A.Cramer. Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome B6F Complex. Structure V. 22 1008 2014.
ISSN: ISSN 0969-2126
PubMed: 24931468
DOI: 10.1016/J.STR.2014.05.004

Page generated: Fri Jul 19 17:49:45 2024

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