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Cadmium in PDB 4q6t: The Crystal Structure of A Class V Chitininase From Pseudomonas Fluorescens Pf-5

Protein crystallography data

The structure of The Crystal Structure of A Class V Chitininase From Pseudomonas Fluorescens Pf-5, PDB code: 4q6t was solved by K.Tan, J.C.Mack, M.Endres, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.46 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.022, 57.327, 110.797, 90.00, 90.00, 90.00
R / Rfree (%) 13.6 / 17.2

Other elements in 4q6t:

The structure of The Crystal Structure of A Class V Chitininase From Pseudomonas Fluorescens Pf-5 also contains other interesting chemical elements:

Nickel (Ni) 3 atoms
Chlorine (Cl) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the The Crystal Structure of A Class V Chitininase From Pseudomonas Fluorescens Pf-5 (pdb code 4q6t). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the The Crystal Structure of A Class V Chitininase From Pseudomonas Fluorescens Pf-5, PDB code: 4q6t:

Cadmium binding site 1 out of 1 in 4q6t

Go back to Cadmium Binding Sites List in 4q6t
Cadmium binding site 1 out of 1 in the The Crystal Structure of A Class V Chitininase From Pseudomonas Fluorescens Pf-5


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Crystal Structure of A Class V Chitininase From Pseudomonas Fluorescens Pf-5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd406

b:16.6
occ:0.83
OD2 A:ASP197 2.4 18.0 1.0
SG A:CYS160 2.5 17.4 1.0
CL A:CL405 2.5 26.2 1.0
CG A:ASP197 3.3 16.8 1.0
CB A:CYS160 3.4 15.5 1.0
CB A:ASP197 3.5 15.9 1.0
CB A:ALA200 3.8 20.1 1.0
O A:HOH619 4.4 28.9 1.0
NE A:ARG156 4.4 21.3 1.0
OD1 A:ASP197 4.4 19.1 1.0
O A:HOH590 4.5 26.1 1.0
O A:HOH699 4.8 34.9 1.0
CG A:ARG156 4.8 18.1 1.0
CA A:CYS160 4.8 15.4 1.0
O A:ARG156 4.9 16.8 1.0
NH2 A:ARG156 5.0 22.7 1.0

Reference:

K.Tan, J.C.Mack, M.Endres, A.Joachimiak. The Crystal Structure of A Class V Chitininase From Pseudomonas Fluorescens Pf-5 To Be Published.
Page generated: Sat Dec 12 08:25:35 2020

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