Atomistry » Cadmium » PDB 4qe1-5ai3 » 4qgm
Atomistry »
  Cadmium »
    PDB 4qe1-5ai3 »
      4qgm »

Cadmium in PDB 4qgm: Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center

Enzymatic activity of Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center

All present enzymatic activity of Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center:
1.13.11.53; 1.13.11.54;

Protein crystallography data

The structure of Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center, PDB code: 4qgm was solved by A.M.Milaczewska, M.Chruszcz, I.G.Shabalin, D.R.Cooper, T.Borowski, W.Minor, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.31 / 2.97
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 106.215, 49.522, 33.349, 90.00, 99.95, 90.00
R / Rfree (%) 18.4 / 23.4

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center (pdb code 4qgm). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center, PDB code: 4qgm:

Cadmium binding site 1 out of 1 in 4qgm

Go back to Cadmium Binding Sites List in 4qgm
Cadmium binding site 1 out of 1 in the Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:41.0
occ:1.00
O A:HOH306 2.2 35.6 1.0
NE2 A:HIS99 2.3 37.8 1.0
NE2 A:HIS144 2.3 30.7 1.0
NE2 A:HIS101 2.4 37.6 1.0
OE2 A:GLU105 2.4 41.7 1.0
O A:HOH302 2.5 17.8 1.0
CE1 A:HIS99 3.1 36.8 1.0
CD2 A:HIS144 3.1 29.9 1.0
CE1 A:HIS101 3.1 39.1 1.0
CD A:GLU105 3.2 42.3 1.0
CD2 A:HIS99 3.2 38.7 1.0
CE1 A:HIS144 3.3 31.9 1.0
CD2 A:HIS101 3.4 37.8 1.0
OE1 A:GLU105 3.5 43.8 1.0
CD1 A:PHE95 4.0 46.2 1.0
ND1 A:HIS99 4.2 36.9 1.0
CG A:GLU105 4.3 42.6 1.0
CG A:HIS99 4.3 38.7 1.0
ND1 A:HIS101 4.3 39.5 1.0
CG A:HIS144 4.3 29.7 1.0
ND1 A:HIS144 4.4 30.9 1.0
CE1 A:PHE116 4.5 32.3 1.0
CE1 A:PHE95 4.5 47.4 1.0
CG A:HIS101 4.5 39.5 1.0
CB A:GLU105 4.8 42.7 1.0

Reference:

A.M.Milaczewska, M.Chruszcz, I.G.Shabalin, D.R.Cooper, T.Borowski, W.Minor. Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center To Be Published.
Page generated: Sat Dec 12 08:25:40 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy