Atomistry » Cadmium » PDB 4qe1-5ai3 » 4qgm
Atomistry »
  Cadmium »
    PDB 4qe1-5ai3 »
      4qgm »

Cadmium in PDB 4qgm: Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center

Enzymatic activity of Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center

All present enzymatic activity of Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center:
1.13.11.53; 1.13.11.54;

Protein crystallography data

The structure of Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center, PDB code: 4qgm was solved by A.M.Milaczewska, M.Chruszcz, I.G.Shabalin, D.R.Cooper, T.Borowski, W.Minor, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.31 / 2.97
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 106.215, 49.522, 33.349, 90.00, 99.95, 90.00
R / Rfree (%) 18.4 / 23.4

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center (pdb code 4qgm). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center, PDB code: 4qgm:

Cadmium binding site 1 out of 1 in 4qgm

Go back to Cadmium Binding Sites List in 4qgm
Cadmium binding site 1 out of 1 in the Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:41.0
occ:1.00
O A:HOH306 2.2 35.6 1.0
NE2 A:HIS99 2.3 37.8 1.0
NE2 A:HIS144 2.3 30.7 1.0
NE2 A:HIS101 2.4 37.6 1.0
OE2 A:GLU105 2.4 41.7 1.0
O A:HOH302 2.5 17.8 1.0
CE1 A:HIS99 3.1 36.8 1.0
CD2 A:HIS144 3.1 29.9 1.0
CE1 A:HIS101 3.1 39.1 1.0
CD A:GLU105 3.2 42.3 1.0
CD2 A:HIS99 3.2 38.7 1.0
CE1 A:HIS144 3.3 31.9 1.0
CD2 A:HIS101 3.4 37.8 1.0
OE1 A:GLU105 3.5 43.8 1.0
CD1 A:PHE95 4.0 46.2 1.0
ND1 A:HIS99 4.2 36.9 1.0
CG A:GLU105 4.3 42.6 1.0
CG A:HIS99 4.3 38.7 1.0
ND1 A:HIS101 4.3 39.5 1.0
CG A:HIS144 4.3 29.7 1.0
ND1 A:HIS144 4.4 30.9 1.0
CE1 A:PHE116 4.5 32.3 1.0
CE1 A:PHE95 4.5 47.4 1.0
CG A:HIS101 4.5 39.5 1.0
CB A:GLU105 4.8 42.7 1.0

Reference:

A.M.Milaczewska, M.Chruszcz, I.G.Shabalin, D.R.Cooper, T.Borowski, W.Minor. Acireductone Dioxygenase From Bacillus Anthracis with Cadmium Ion in Active Center To Be Published.
Page generated: Thu Jul 10 13:58:13 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy