Cadmium in PDB 4xdq: Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile

The structure of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile, PDB code: 4xdq was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.35
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	74.550, 74.550, 95.530, 90.00, 90.00, 90.00
R / Rfree (%)	12.5 / 14.8

The structure of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	2 atoms
Calcium	(Ca)	1 atom

The binding sites of Cadmium atom in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile (pdb code 4xdq). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile, PDB code: 4xdq:

Cadmium binding site 1 out of 1 in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd302 b:11.6 occ:1.00 OD2 A:ASP254 2.1 9.1 1.0 O2 A:BEZ306 2.4 12.3 1.0 CL A:CL305 2.4 17.9 1.0 O1 A:BEZ306 2.6 11.6 1.0 C A:BEZ306 2.8 12.4 1.0 CG A:ASP254 3.0 9.3 1.0 OD1 A:ASP254 3.1 9.9 1.0 O A:HOH439 3.9 18.8 1.0 NH1 A:ARG117 4.1 11.5 1.0 CD1 A:TRP255 4.1 9.6 1.0 NE1 A:TRP255 4.1 9.8 1.0 O A:HOH422 4.3 20.5 1.0 O A:HOH493 4.3 17.2 1.0 C1 A:BEZ306 4.3 14.3 1.0 O A:HOH408 4.4 9.9 1.0 CB A:ASP254 4.4 8.7 1.0 O A:HOH440 4.6 11.7 1.0 CD A:ARG117 4.7 10.4 1.0 CZ A:ARG117 4.8 12.2 1.0 CA A:CA301 4.8 9.1 1.0

T.E.Edwards, J.Abendroth, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile To Be Published.