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Cadmium in PDB 4xdq: Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile

Protein crystallography data

The structure of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile, PDB code: 4xdq was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.550, 74.550, 95.530, 90.00, 90.00, 90.00
R / Rfree (%) 12.5 / 14.8

Other elements in 4xdq:

The structure of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 2 atoms
Calcium (Ca) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile (pdb code 4xdq). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile, PDB code: 4xdq:

Cadmium binding site 1 out of 1 in 4xdq

Go back to Cadmium Binding Sites List in 4xdq
Cadmium binding site 1 out of 1 in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd302

b:11.6
occ:1.00
OD2 A:ASP254 2.1 9.1 1.0
O2 A:BEZ306 2.4 12.3 1.0
CL A:CL305 2.4 17.9 1.0
O1 A:BEZ306 2.6 11.6 1.0
C A:BEZ306 2.8 12.4 1.0
CG A:ASP254 3.0 9.3 1.0
OD1 A:ASP254 3.1 9.9 1.0
O A:HOH439 3.9 18.8 1.0
NH1 A:ARG117 4.1 11.5 1.0
CD1 A:TRP255 4.1 9.6 1.0
NE1 A:TRP255 4.1 9.8 1.0
O A:HOH422 4.3 20.5 1.0
O A:HOH493 4.3 17.2 1.0
C1 A:BEZ306 4.3 14.3 1.0
O A:HOH408 4.4 9.9 1.0
CB A:ASP254 4.4 8.7 1.0
O A:HOH440 4.6 11.7 1.0
CD A:ARG117 4.7 10.4 1.0
CZ A:ARG117 4.8 12.2 1.0
CA A:CA301 4.8 9.1 1.0

Reference:

T.E.Edwards, J.Abendroth, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile To Be Published.
Page generated: Sat Dec 12 08:25:58 2020

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