Cadmium in PDB 4z3b: Crystal Structure of Mnco/Apo-R52CFR

The structure of Crystal Structure of Mnco/Apo-R52CFR, PDB code: 4z3b was solved by K.Fujita, Y.Tanaka, S.Abe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.71 / 1.42
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	181.733, 181.733, 181.733, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 17.7

The structure of Crystal Structure of Mnco/Apo-R52CFR also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

The binding sites of Cadmium atom in the Crystal Structure of Mnco/Apo-R52CFR (pdb code 4z3b). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Mnco/Apo-R52CFR, PDB code: 4z3b:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Crystal Structure of Mnco/Apo-R52CFR


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Mnco/Apo-R52CFR within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:21.8 occ:0.50 OD2 A:ASP80 2.2 22.7 1.0 OD1 A:ASP80 2.3 15.5 1.0 CG A:ASP80 2.6 14.9 1.0 CB A:ASP80 4.0 15.3 1.0 O A:HOH330 4.5 22.3 1.0

Cadmium binding site 2 out of 3 in the Crystal Structure of Mnco/Apo-R52CFR


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Mnco/Apo-R52CFR within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:27.7 occ:0.10 O A:HOH314 2.2 27.3 1.0 O A:HOH327 2.4 33.3 0.3 OD1 A:ASP127 2.6 22.0 1.0 CG A:ASP127 3.6 16.4 1.0 OG A:SER131 4.0 20.6 1.0 OD2 A:ASP127 4.1 19.6 1.0 OE1 A:GLU130 4.5 19.2 1.0 CD A:CD203 4.6 37.8 0.1 CB A:ASP127 5.0 13.6 1.0

Cadmium binding site 3 out of 3 in the Crystal Structure of Mnco/Apo-R52CFR


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Mnco/Apo-R52CFR within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:37.8 occ:0.10 O A:HOH327 2.2 33.3 0.3 OE1 A:GLU130 2.4 19.2 1.0 CD A:GLU130 3.4 19.3 1.0 OE2 A:GLU130 3.5 16.9 1.0 OD1 A:ASP127 4.2 22.0 1.0 CD A:CD202 4.6 27.7 0.1 CG A:GLU130 4.8 13.6 1.0 CG A:ASP127 4.9 16.4 1.0 CB A:ASP127 4.9 13.6 1.0

K.Fujita, Y.Tanaka, S.Abe, T.Ueno. A Photoactive Carbon-Monoxide-Releasing Protein Cage For Dose-Regulated Delivery in Living Cells Angew.Chem.Int.Ed.Engl. V. 55 1056 2016.
ISSN: ESSN 1521-3773
PubMed: 26332099
DOI: 10.1002/ANIE.201506738