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Cadmium in PDB 5ai2: Anomalous Neutron Phased Crystal Structure of 113CD- Substituted Perdeuterated Pyrococcus Furiosus Rubredoxin to 1.75A Resolution at 295K

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Anomalous Neutron Phased Crystal Structure of 113CD- Substituted Perdeuterated Pyrococcus Furiosus Rubredoxin to 1.75A Resolution at 295K (pdb code 5ai2). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Anomalous Neutron Phased Crystal Structure of 113CD- Substituted Perdeuterated Pyrococcus Furiosus Rubredoxin to 1.75A Resolution at 295K, PDB code: 5ai2:

Cadmium binding site 1 out of 1 in 5ai2

Go back to Cadmium Binding Sites List in 5ai2
Cadmium binding site 1 out of 1 in the Anomalous Neutron Phased Crystal Structure of 113CD- Substituted Perdeuterated Pyrococcus Furiosus Rubredoxin to 1.75A Resolution at 295K


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Anomalous Neutron Phased Crystal Structure of 113CD- Substituted Perdeuterated Pyrococcus Furiosus Rubredoxin to 1.75A Resolution at 295K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1054

b:10.5
occ:1.00
SG A:CYS38 2.7 16.1 1.0
SG A:CYS5 2.7 15.6 1.0
SG A:CYS41 2.7 16.1 1.0
SG A:CYS8 2.7 15.8 1.0
DB3 A:CYS8 2.9 17.6 1.0
H A:CYS8 3.1 15.5 0.4
D A:CYS8 3.1 15.5 0.6
DB3 A:CYS41 3.1 18.4 1.0
DB A:ILE7 3.1 18.0 1.0
DB3 A:CYS5 3.1 15.2 1.0
D A:CYS41 3.2 16.5 0.9
H A:CYS41 3.2 16.5 0.1
DB3 A:CYS38 3.2 14.7 1.0
CB A:CYS8 3.3 15.1 1.0
CB A:CYS38 3.4 12.7 1.0
CB A:CYS5 3.4 14.2 1.0
DB2 A:CYS38 3.5 15.1 1.0
CB A:CYS41 3.5 14.7 1.0
DB3 A:TYR10 3.5 14.0 1.0
DB A:ILE40 3.5 18.4 1.0
DB1 A:ALA43 3.5 15.5 1.0
DB2 A:CYS5 3.6 14.5 1.0
N A:CYS8 3.8 15.3 1.0
H A:ALA43 3.9 15.0 1.0
N A:CYS41 4.0 14.0 1.0
H A:TYR10 4.0 14.3 1.0
DB3 A:ALA43 4.1 16.7 1.0
CA A:CYS8 4.1 14.1 1.0
CB A:ILE7 4.2 16.8 1.0
DB2 A:CYS8 4.2 19.9 1.0
CA A:CYS41 4.3 13.1 1.0
CB A:ALA43 4.3 15.7 1.0
H A:GLY9 4.4 14.6 0.0
D A:GLY9 4.4 14.6 1.0
DB2 A:CYS41 4.4 19.6 1.0
DB2 A:TYR10 4.4 16.6 1.0
CB A:TYR10 4.4 14.4 1.0
D A:ILE7 4.5 17.3 0.5
H A:ILE7 4.5 17.3 0.5
D A:GLY42 4.5 15.2 1.0
H A:GLY42 4.5 15.2 0.0
H A:ILE40 4.5 15.8 0.8
D A:ILE40 4.5 15.8 0.2
DG23 A:ILE7 4.5 23.6 1.0
CB A:ILE40 4.6 17.5 1.0
DZ A:PHE48 4.7 16.5 1.0
C A:ILE7 4.8 15.1 1.0
DG21 A:ILE7 4.8 20.2 1.0
CG2 A:ILE7 4.8 20.3 1.0
N A:ALA43 4.8 13.5 1.0
DG12 A:ILE7 4.9 19.5 1.0
CA A:CYS38 4.9 12.6 1.0
N A:GLY9 4.9 12.8 1.0
CA A:CYS5 4.9 11.9 1.0
C A:CYS8 4.9 13.1 1.0
N A:TYR10 4.9 11.2 1.0
DD2 A:TYR10 4.9 15.4 1.0
N A:GLY42 4.9 12.2 1.0
CA A:ILE7 4.9 17.2 1.0
C A:CYS41 4.9 14.1 1.0

Reference:

M.G.Cuypers, S.A.Mason, E.Mossou, M.Haertlein, V.T.Forsyth, E.P.Mitchell. Macromolecular Structure Phasing By Neutron Anomalous Diffraction. Sci.Rep. V. 6 31487 2016.
ISSN: ISSN 2045-2322
PubMed: 27511806
DOI: 10.1038/SREP31487
Page generated: Sat Dec 12 08:26:12 2020

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