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Cadmium in PDB 5cy7: Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
Enzymatic activity of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
All present enzymatic activity of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275:
3.5.1.88;
3.5.1.88;
Protein crystallography data
The structure of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275, PDB code: 5cy7
was solved by
H.P.T.Ngo,
L.W.Kang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 30.40 / 2.40 |
| Space group | P 61 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 58.823, 58.823, 264.034, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 18.1 / 21.2 |
Other elements in 5cy7:
The structure of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275 also contains other interesting chemical elements:
| Fluorine | (F) | 2 atoms |
| Sodium | (Na) | 1 atom |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
(pdb code 5cy7). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275, PDB code: 5cy7:
Jump to Cadmium binding site number: 1; 2; 3;
In total 3 binding sites of Cadmium where determined in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275, PDB code: 5cy7:
Jump to Cadmium binding site number: 1; 2; 3;
Cadmium binding site 1 out of 3 in 5cy7
Go back to
Cadmium Binding Sites List in 5cy7
Cadmium binding site 1 out
of 3 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275 within 5.0Å range:
|
Cadmium binding site 2 out of 3 in 5cy7
Go back to
Cadmium Binding Sites List in 5cy7
Cadmium binding site 2 out
of 3 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275 within 5.0Å range:
|
Cadmium binding site 3 out of 3 in 5cy7
Go back to
Cadmium Binding Sites List in 5cy7
Cadmium binding site 3 out
of 3 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275 within 5.0Å range:
|
Reference:
H.P.T.Ngo,
L.W.Kang.
Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryze Pv Oryze, in Complex with Fragment 275 To Be Published.
Page generated: Sat Dec 12 08:26:30 2020
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