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Cadmium in PDB 5e1u: Crystal Structure of Ircp*-Apo-Fr

Protein crystallography data

The structure of Crystal Structure of Ircp*-Apo-Fr, PDB code: 5e1u was solved by B.Maity, K.Fukumori, S.Abe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.13 / 1.56
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.035, 181.035, 181.035, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 18.8

Other elements in 5e1u:

The structure of Crystal Structure of Ircp*-Apo-Fr also contains other interesting chemical elements:

Iridium (Ir) 7 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Ircp*-Apo-Fr (pdb code 5e1u). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Ircp*-Apo-Fr, PDB code: 5e1u:

Cadmium binding site 1 out of 1 in 5e1u

Go back to Cadmium Binding Sites List in 5e1u
Cadmium binding site 1 out of 1 in the Crystal Structure of Ircp*-Apo-Fr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Ircp*-Apo-Fr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd207

b:14.0
occ:0.30
OD1 A:ASP80 2.3 12.7 1.0
OD2 A:ASP80 2.6 23.4 1.0
CG A:ASP80 2.9 15.5 1.0
CB A:ASP80 4.4 17.1 1.0
O A:HOH362 4.4 22.0 1.0
O A:HOH314 4.6 25.2 1.0

Reference:

B.Maity, K.Fukumori, S.Abe, T.Ueno. Immobilization of Two Organometallic Complexes Into A Single Cage to Construct Protein-Based Microcompartments Chem.Commun.(Camb.) V. 52 5463 2016.
ISSN: ESSN 1364-548X
PubMed: 27021005
DOI: 10.1039/C6CC00679E
Page generated: Sat Dec 12 08:26:32 2020

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