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Cadmium in PDB 5f53: Nano-Ring of Cadmium Ions Coordinated By NVPIZZA2-S16S58

Protein crystallography data

The structure of Nano-Ring of Cadmium Ions Coordinated By NVPIZZA2-S16S58, PDB code: 5f53 was solved by A.R.D.Voet, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 1.80
Space group I 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 110.320, 110.320, 110.320, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 21

Other elements in 5f53:

The structure of Nano-Ring of Cadmium Ions Coordinated By NVPIZZA2-S16S58 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Nano-Ring of Cadmium Ions Coordinated By NVPIZZA2-S16S58 (pdb code 5f53). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Nano-Ring of Cadmium Ions Coordinated By NVPIZZA2-S16S58, PDB code: 5f53:

Cadmium binding site 1 out of 1 in 5f53

Go back to Cadmium Binding Sites List in 5f53
Cadmium binding site 1 out of 1 in the Nano-Ring of Cadmium Ions Coordinated By NVPIZZA2-S16S58


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Nano-Ring of Cadmium Ions Coordinated By NVPIZZA2-S16S58 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:16.1
occ:1.00
NE2 A:HIS31 2.3 21.7 1.0
O A:HOH244 2.4 22.9 1.0
CL A:CL102 2.5 18.0 0.5
CL A:CL103 2.7 16.9 0.5
CE1 A:HIS31 3.3 21.1 1.0
CD2 A:HIS31 3.3 20.1 1.0
O A:HOH242 4.2 21.8 1.0
ND1 A:HIS31 4.4 19.4 1.0
CG A:HIS31 4.5 19.2 1.0
O A:HOH250 4.9 42.5 1.0

Reference:

A.R.D.Voet, D.Terada, H.Noguchi, C.Addy, S.Unzai, S.Akashi, K.Y.J.Zhang, J.R.H.Tame. A Cadmium Chloride Ring Created By A Designed Symmetrical Protein To Be Published.
Page generated: Sat Dec 12 08:26:36 2020

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