Cadmium in PDB 5gu0: Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr

The structure of Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr, PDB code: 5gu0 was solved by B.Maity, S.Abe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.98 / 1.95
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.892, 180.892, 180.892, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 20.5

The structure of Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr also contains other interesting chemical elements:

Gold

(Au)

8 atoms

The binding sites of Cadmium atom in the Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr (pdb code 5gu0). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr, PDB code: 5gu0:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd209 b:35.9 occ:0.50 OD2 X:ASP80 1.9 29.0 1.0 OD1 X:ASP80 2.5 16.9 1.0 CG X:ASP80 2.7 20.3 1.0 CB X:ASP80 4.1 25.4 1.0 O X:HOH344 4.4 31.0 1.0

Cadmium binding site 2 out of 3 in the Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd210 b:40.4 occ:0.20 OE1 X:GLU130 2.2 53.9 1.0 CD X:GLU130 3.1 54.4 1.0 OE2 X:GLU130 3.3 64.5 1.0 CG X:GLU130 4.6 52.5 1.0

Cadmium binding site 3 out of 3 in the Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Au.Cl-Apo-E45C/R52C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd211 b:64.7 occ:0.40 OE2 X:GLU56 2.4 55.2 1.0 OE2 X:GLU60 2.5 44.0 1.0 OE1 X:GLU60 2.7 44.6 1.0 CD X:GLU60 2.9 42.6 1.0 CD X:GLU56 3.3 45.7 1.0 CG X:GLU56 3.9 34.5 1.0 OE1 X:GLU56 4.2 58.7 1.0 CG X:GLU60 4.5 31.2 1.0 O X:HOH341 4.5 56.2 1.0

B.Maity, S.Abe, T.Ueno. Observation of Gold Sub-Nanocluster Nucleation Within A Crystalline Protein Cage Nat Commun V. 8 14820 2017.
ISSN: ESSN 2041-1723
PubMed: 28300064
DOI: 10.1038/NCOMMS14820