Cadmium in PDB 5jvp: The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E

The structure of The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E, PDB code: 5jvp was solved by R.K.Phillips, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.79 / 2.10
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	100.609, 100.609, 107.627, 90.00, 90.00, 120.00
R / Rfree (%)	23.7 / 27.4

The binding sites of Cadmium atom in the The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E (pdb code 5jvp). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E, PDB code: 5jvp:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd101 b:0.7 occ:0.97 O A:HOH271 3.9 34.3 1.0 CE A:LYS24 4.0 28.7 1.0 CD A:LYS24 4.3 23.3 1.0 CG A:LYS24 4.8 20.6 1.0

Cadmium binding site 2 out of 3 in the The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd101 b:0.8 occ:1.00 O B:HOH307 2.9 53.8 1.0 OE1 B:GLU84 2.9 54.7 1.0 O B:HOH309 2.9 60.7 1.0 O B:HOH313 2.9 62.1 1.0 O B:HOH223 3.0 63.1 1.0 OE2 B:GLU84 3.2 50.6 1.0 CD B:GLU84 3.4 49.8 1.0 O B:HOH263 3.4 52.9 1.0 CG B:GLU84 4.9 42.4 1.0

Cadmium binding site 3 out of 3 in the The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of The Neck-Linker and Alpha 7 Helix of Homo Sapiens Cenp-E within 5.0Å range: probe atom residue distance (Å) B Occ D:Cd101 b:0.8 occ:0.50 O B:HOH201 3.1 20.1 1.0 OD2 B:ASP69 3.3 55.3 1.0 OD1 B:ASP69 3.7 58.0 1.0 CG B:ASP69 3.8 55.4 1.0

R.K.Phillips, L.G.Peter, S.P.Gilbert, I.Rayment. Family-Specific Kinesin Structures Reveal Neck-Linker Length Based on Initiation of the Coiled-Coil. J.Biol.Chem. V. 291 20372 2016.
ISSN: ESSN 1083-351X
PubMed: 27462072
DOI: 10.1074/JBC.M116.737577