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Cadmium in PDB 5lg2: Horse L Type Ferritin Iron Loaded For 60 Minutes

Protein crystallography data

The structure of Horse L Type Ferritin Iron Loaded For 60 Minutes, PDB code: 5lg2 was solved by C.Pozzi, F.Di Pisa, S.Mangani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.61 / 2.22
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 181.350, 181.350, 181.350, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 22.4

Other elements in 5lg2:

The structure of Horse L Type Ferritin Iron Loaded For 60 Minutes also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Chlorine (Cl) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Horse L Type Ferritin Iron Loaded For 60 Minutes (pdb code 5lg2). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Horse L Type Ferritin Iron Loaded For 60 Minutes, PDB code: 5lg2:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 5lg2

Go back to Cadmium Binding Sites List in 5lg2
Cadmium binding site 1 out of 3 in the Horse L Type Ferritin Iron Loaded For 60 Minutes


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Horse L Type Ferritin Iron Loaded For 60 Minutes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:31.8
occ:0.50
OD2 A:ASP80 2.2 21.6 1.0
OD1 A:ASP80 2.6 21.3 1.0
O A:HOH437 2.7 26.0 1.0
CG A:ASP80 2.7 21.0 1.0
CB A:ASP80 4.2 19.9 1.0
O A:HOH360 4.5 28.5 1.0

Cadmium binding site 2 out of 3 in 5lg2

Go back to Cadmium Binding Sites List in 5lg2
Cadmium binding site 2 out of 3 in the Horse L Type Ferritin Iron Loaded For 60 Minutes


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Horse L Type Ferritin Iron Loaded For 60 Minutes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd202

b:50.6
occ:0.30
OE1 A:GLU11 2.6 42.7 1.0
OE2 A:GLU11 2.6 46.0 1.0
O A:HOH405 3.0 36.0 1.0
CD A:GLU11 3.0 41.8 1.0
OG1 A:THR10 4.1 34.3 1.0
CB A:SER9 4.5 23.3 1.0
CG A:GLU11 4.5 34.1 1.0
OE1 A:GLN120 4.6 43.5 1.0
N A:THR10 4.8 24.9 1.0
NE2 A:GLN120 5.0 42.6 1.0

Cadmium binding site 3 out of 3 in 5lg2

Go back to Cadmium Binding Sites List in 5lg2
Cadmium binding site 3 out of 3 in the Horse L Type Ferritin Iron Loaded For 60 Minutes


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Horse L Type Ferritin Iron Loaded For 60 Minutes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd203

b:0.2
occ:0.30
OE1 A:GLU130 2.4 66.7 1.0
CD A:GLU130 3.2 60.5 1.0
OE2 A:GLU130 3.2 63.1 1.0
O A:HOH301 3.3 73.8 1.0
O A:HOH399 4.5 60.1 0.3
CG A:GLU130 4.6 53.8 1.0

Reference:

C.Pozzi, S.Ciambellotti, C.Bernacchioni, F.Di Pisa, S.Mangani, P.Turano. Chemistry at the Protein-Mineral Interface in L-Ferritin Assists the Assembly of A Functional ( Mu (3)-Oxo)Tris[( Mu (2)-Peroxo)] Triiron(III) Cluster. Proc. Natl. Acad. Sci. V. 114 2580 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28202724
DOI: 10.1073/PNAS.1614302114
Page generated: Sat Dec 12 08:26:57 2020

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