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Cadmium in PDB 5tsa: Crystal Structure of the Zrt-/Irt-Like Protein From Bordetella Bronchiseptica with Bound ZN2+

Protein crystallography data

The structure of Crystal Structure of the Zrt-/Irt-Like Protein From Bordetella Bronchiseptica with Bound ZN2+, PDB code: 5tsa was solved by T.Zhang, M.Fellner, D.Sui, J.Liu, J.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.37 / 2.40
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 55.006, 61.073, 94.394, 90.00, 104.02, 90.00
R / Rfree (%) 21.2 / 25.7

Other elements in 5tsa:

The structure of Crystal Structure of the Zrt-/Irt-Like Protein From Bordetella Bronchiseptica with Bound ZN2+ also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of the Zrt-/Irt-Like Protein From Bordetella Bronchiseptica with Bound ZN2+ (pdb code 5tsa). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of the Zrt-/Irt-Like Protein From Bordetella Bronchiseptica with Bound ZN2+, PDB code: 5tsa:

Cadmium binding site 1 out of 1 in 5tsa

Go back to Cadmium Binding Sites List in 5tsa
Cadmium binding site 1 out of 1 in the Crystal Structure of the Zrt-/Irt-Like Protein From Bordetella Bronchiseptica with Bound ZN2+


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Zrt-/Irt-Like Protein From Bordetella Bronchiseptica with Bound ZN2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd407

b:54.2
occ:0.47
OE1 A:GLU181 2.6 40.9 1.0
OE2 A:GLU240 2.6 45.2 1.0
OD1 A:ASP208 2.7 41.7 1.0
OD1 A:ASN178 2.7 51.8 1.0
OE1 A:GLU211 2.7 42.1 1.0
O A:HOH507 2.8 44.6 1.0
CG A:ASP208 3.7 41.0 1.0
CD A:GLU240 3.8 50.2 1.0
CD A:GLU181 3.8 43.2 1.0
CG A:ASN178 3.8 52.9 1.0
CD A:GLU211 4.0 47.3 1.0
NE2 A:GLN207 4.0 34.2 1.0
OD2 A:ASP208 4.3 44.4 1.0
OE1 A:GLU240 4.3 46.9 1.0
OE2 A:GLU181 4.3 44.3 1.0
ZN A:ZN401 4.4 52.0 1.0
CB A:GLU211 4.5 39.7 1.0
OG1 A:THR70 4.6 37.0 1.0
ND2 A:ASN178 4.6 49.4 1.0
CA A:ASP208 4.7 36.5 1.0
CB A:ASP208 4.7 40.5 1.0
OE2 A:GLU211 4.7 52.2 1.0
CA A:ASN178 4.8 43.9 1.0
CB A:ASN178 4.8 49.4 1.0
CB A:GLU181 4.9 37.0 1.0
CG A:GLU211 4.9 39.1 1.0
CG A:GLU181 4.9 41.3 1.0
O A:HOH503 4.9 45.5 1.0
CG A:GLU240 4.9 48.8 1.0
CD A:GLN207 4.9 38.2 1.0
OE1 A:GLN207 4.9 40.7 1.0

Reference:

T.Zhang, J.Liu, M.Fellner, C.Zhang, D.Sui, J.Hu. Crystal Structures of A Zip Zinc Transporter Reveal A Binuclear Metal Center in the Transport Pathway. Sci Adv V. 3 00344 2017.
ISSN: ESSN 2375-2548
PubMed: 28875161
DOI: 10.1126/SCIADV.1700344
Page generated: Sat Dec 12 08:27:40 2020

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