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Cadmium in PDB 5wro: Crystal Structure of Drosophila Enolase

Enzymatic activity of Crystal Structure of Drosophila Enolase

All present enzymatic activity of Crystal Structure of Drosophila Enolase:
4.2.1.11;

Protein crystallography data

The structure of Crystal Structure of Drosophila Enolase, PDB code: 5wro was solved by Z.Zhang, Z.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.33 / 2.02
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 118.820, 118.820, 229.792, 90.00, 90.00, 120.00
R / Rfree (%) 15.9 / 20

Other elements in 5wro:

The structure of Crystal Structure of Drosophila Enolase also contains other interesting chemical elements:

Cobalt (Co) 1 atom
Chlorine (Cl) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Drosophila Enolase (pdb code 5wro). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Crystal Structure of Drosophila Enolase, PDB code: 5wro:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 5wro

Go back to Cadmium Binding Sites List in 5wro
Cadmium binding site 1 out of 2 in the Crystal Structure of Drosophila Enolase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Drosophila Enolase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd601

b:41.9
occ:1.00
O A:GLY62 2.4 54.8 1.0
N A:GLY62 2.7 59.7 1.0
C A:GLY62 3.1 53.9 1.0
CA A:GLY62 3.2 55.8 1.0
N A:ALA63 4.4 51.3 1.0
O A:HOH946 4.7 51.7 1.0

Cadmium binding site 2 out of 2 in 5wro

Go back to Cadmium Binding Sites List in 5wro
Cadmium binding site 2 out of 2 in the Crystal Structure of Drosophila Enolase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Drosophila Enolase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd602

b:43.1
occ:1.00
O A:HOH707 2.3 30.2 1.0
OE1 A:GLU361 2.4 36.6 1.0
OD2 A:ASP312 2.4 35.5 1.0
OD1 A:ASP386 2.5 33.8 1.0
O A:HOH720 2.6 42.3 1.0
CL A:CL604 2.8 53.9 1.0
CG A:ASP312 3.1 36.5 1.0
OD1 A:ASP312 3.2 37.5 1.0
CD A:GLU361 3.4 40.6 1.0
CG A:ASP386 3.5 33.0 1.0
CB A:ASP386 3.8 26.6 1.0
NZ A:LYS462 4.0 35.1 1.0
OD2 A:ASP362 4.0 42.7 1.0
OE2 A:GLU361 4.1 34.5 1.0
CG A:GLU361 4.3 30.6 1.0
NZ A:LYS411 4.4 26.7 1.0
OE1 A:GLN233 4.5 45.8 1.0
CB A:ASP312 4.5 35.6 1.0
OD2 A:ASP386 4.6 37.5 1.0
CD2 A:LEU409 4.7 26.0 1.0

Reference:

C.Sun, B.Xu, X.Liu, Z.Zhang, Z.Su. Crystal Structure of Enolase From Drosophila Melanogaster. Acta Crystallogr F Struct V. 73 228 2017BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 28368282
DOI: 10.1107/S2053230X17004022
Page generated: Sat Dec 12 08:27:56 2020

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