Cadmium in PDB 5wro: Crystal Structure of Drosophila Enolase

All present enzymatic activity of Crystal Structure of Drosophila Enolase:
4.2.1.11;

The structure of Crystal Structure of Drosophila Enolase, PDB code: 5wro was solved by Z.Zhang, Z.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.33 / 2.02
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	118.820, 118.820, 229.792, 90.00, 90.00, 120.00
R / Rfree (%)	15.9 / 20

The structure of Crystal Structure of Drosophila Enolase also contains other interesting chemical elements:

Cobalt	(Co)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Cadmium atom in the Crystal Structure of Drosophila Enolase (pdb code 5wro). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Crystal Structure of Drosophila Enolase, PDB code: 5wro:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Crystal Structure of Drosophila Enolase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Drosophila Enolase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd601 b:41.9 occ:1.00 O A:GLY62 2.4 54.8 1.0 N A:GLY62 2.7 59.7 1.0 C A:GLY62 3.1 53.9 1.0 CA A:GLY62 3.2 55.8 1.0 N A:ALA63 4.4 51.3 1.0 O A:HOH946 4.7 51.7 1.0

Cadmium binding site 2 out of 2 in the Crystal Structure of Drosophila Enolase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Drosophila Enolase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd602 b:43.1 occ:1.00 O A:HOH707 2.3 30.2 1.0 OE1 A:GLU361 2.4 36.6 1.0 OD2 A:ASP312 2.4 35.5 1.0 OD1 A:ASP386 2.5 33.8 1.0 O A:HOH720 2.6 42.3 1.0 CL A:CL604 2.8 53.9 1.0 CG A:ASP312 3.1 36.5 1.0 OD1 A:ASP312 3.2 37.5 1.0 CD A:GLU361 3.4 40.6 1.0 CG A:ASP386 3.5 33.0 1.0 CB A:ASP386 3.8 26.6 1.0 NZ A:LYS462 4.0 35.1 1.0 OD2 A:ASP362 4.0 42.7 1.0 OE2 A:GLU361 4.1 34.5 1.0 CG A:GLU361 4.3 30.6 1.0 NZ A:LYS411 4.4 26.7 1.0 OE1 A:GLN233 4.5 45.8 1.0 CB A:ASP312 4.5 35.6 1.0 OD2 A:ASP386 4.6 37.5 1.0 CD2 A:LEU409 4.7 26.0 1.0

C.Sun, B.Xu, X.Liu, Z.Zhang, Z.Su. Crystal Structure of Enolase From Drosophila Melanogaster. Acta Crystallogr F Struct V. 73 228 2017BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 28368282
DOI: 10.1107/S2053230X17004022