Cadmium in PDB 5y9r: Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Strain MF66

The structure of Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Strain MF66, PDB code: 5y9r was solved by K.Suguna, S.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.60 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.120, 57.430, 62.600, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 23.8

The structure of Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Strain MF66 also contains other interesting chemical elements:

Nickel

(Ni)

2 atoms

The binding sites of Cadmium atom in the Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Strain MF66 (pdb code 5y9r). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Strain MF66, PDB code: 5y9r:

Cadmium binding site 1 out of 1 in the Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Strain MF66


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Oligomerization Domain of NSP4 From Rotavirus Strain MF66 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd201 b:51.1 occ:1.00 OD2 B:ASP114 2.5 42.5 1.0 NE2 D:HIS131 2.5 38.9 1.0 OD1 B:ASP114 2.8 42.6 1.0 CG B:ASP114 3.0 43.5 1.0 CD2 D:HIS131 3.3 34.3 1.0 CE1 D:HIS131 3.6 40.6 1.0 O B:HOH313 4.3 51.0 1.0 CB B:ASP114 4.5 37.1 1.0 CG D:HIS131 4.5 34.8 1.0 ND1 D:HIS131 4.6 33.9 1.0 O B:LEU110 4.6 44.9 1.0 O B:HOH310 4.9 39.3 1.0

K.Suguna, S.Kumar. New Tetrameric Forms of the Rotavirus NSP4 with Antiparallel Helices To Be Published.