Cadmium in PDB 6du9: Crystal Structure of Human Prion Protein 90-231

The structure of Crystal Structure of Human Prion Protein 90-231, PDB code: 6du9 was solved by M.C.Nonato, V.L.Rangel, F.A.Pavlovici, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	65.69 / 2.33
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	72.170, 72.170, 158.550, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 23.5

The structure of Crystal Structure of Human Prion Protein 90-231 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Cadmium atom in the Crystal Structure of Human Prion Protein 90-231 (pdb code 6du9). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Human Prion Protein 90-231, PDB code: 6du9:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Crystal Structure of Human Prion Protein 90-231


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Human Prion Protein 90-231 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd301 b:45.1 occ:0.50 ND1 A:HIS177 2.2 40.6 1.0 CL A:CL304 2.4 46.3 1.0 CE1 A:HIS177 3.0 42.7 1.0 CG A:HIS177 3.3 41.0 1.0 CB A:HIS177 3.8 39.9 1.0 CA A:HIS177 4.1 43.3 1.0 NE2 A:HIS177 4.2 41.6 1.0 CD2 A:HIS177 4.3 41.9 1.0

Cadmium binding site 2 out of 3 in the Crystal Structure of Human Prion Protein 90-231


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Human Prion Protein 90-231 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd302 b:60.4 occ:1.00 OD2 A:ASP147 2.1 67.6 0.9 O A:HOH402 2.2 46.1 1.0 OD1 A:ASP147 2.3 62.1 0.9 O A:HOH404 2.4 26.2 1.0 ND1 A:HIS140 2.4 56.5 1.0 CG A:ASP147 2.5 55.0 0.9 CE1 A:HIS140 3.4 61.6 1.0 CG A:HIS140 3.4 54.6 1.0 CB A:HIS140 3.6 49.6 1.0 NH1 A:ARG151 4.0 72.2 0.9 CB A:ASP147 4.0 49.5 0.9 CA A:HIS140 4.2 50.4 1.0 NE2 A:HIS140 4.5 58.5 1.0 CD2 A:HIS140 4.5 60.9 1.0 CD A:ARG151 4.7 74.8 0.9 CA A:ASP147 4.9 50.1 0.9 O A:ASP147 5.0 48.9 0.9

Cadmium binding site 3 out of 3 in the Crystal Structure of Human Prion Protein 90-231


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Human Prion Protein 90-231 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd303 b:61.5 occ:1.00 OE2 A:GLU207 2.4 52.8 1.0 OE1 A:GLU207 2.4 47.2 1.0 O A:HOH416 2.5 30.5 1.0 O A:HOH417 2.7 39.7 1.0 CD A:GLU207 2.8 48.8 1.0 CG A:GLU207 4.3 47.2 1.0 CG1 A:VAL203 4.4 60.0 1.0

V.L.Rangel, M.C.Nonato, F.A.Pavlovici. Crystal Structure of Human Prion Protein 90-231 To Be Published.