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Cadmium in PDB 6grv: Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt)

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt) (pdb code 6grv). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt), PDB code: 6grv:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 6grv

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Cadmium binding site 1 out of 4 in the Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:0.0
occ:1.00
NE2 A:HIS36 2.2 0.0 1.0
SG A:CYS32 2.5 0.0 1.0
SG A:CYS49 2.6 0.0 1.0
SG A:CYS7 2.6 0.0 1.0
HB2 A:CYS10 2.6 0.0 1.0
HE1 A:HIS36 2.7 0.0 1.0
CE1 A:HIS36 2.8 0.0 1.0
HB2 A:CYS49 3.0 0.0 1.0
HB2 A:CYS7 3.2 0.0 1.0
CB A:CYS7 3.3 0.0 1.0
HB3 A:CYS7 3.3 0.0 1.0
CB A:CYS49 3.4 0.0 1.0
CD2 A:HIS36 3.4 0.0 1.0
CB A:CYS10 3.7 0.0 1.0
HD2 A:HIS36 3.9 0.0 1.0
HB3 A:CYS10 4.0 0.0 1.0
HB3 A:CYS49 4.0 0.0 1.0
HA A:CYS32 4.0 0.0 1.0
ND1 A:HIS36 4.0 0.0 1.0
HB3 A:CYS42 4.0 0.0 1.0
CB A:CYS32 4.1 0.0 1.0
CD A:CD102 4.1 0.0 1.0
CD A:CD104 4.2 0.0 1.0
O A:CYS49 4.3 0.0 1.0
HB3 A:CYS32 4.3 0.0 1.0
CG A:HIS36 4.4 0.0 1.0
H A:CYS42 4.4 0.0 1.0
C A:CYS49 4.5 0.0 1.0
SG A:CYS10 4.5 0.0 1.0
CA A:CYS49 4.5 0.0 1.0
HA A:CYS10 4.6 0.0 1.0
CA A:CYS10 4.6 0.0 1.0
CA A:CYS32 4.6 0.0 1.0
N A:CYS10 4.7 0.0 1.0
CA A:CYS7 4.8 0.0 1.0
HB2 A:ASP9 4.8 0.0 1.0
HA A:PRO41 4.8 0.0 1.0
HB2 A:CYS32 4.8 0.0 1.0
HD1 A:HIS36 4.8 0.0 1.0
H A:CYS10 4.8 0.0 1.0
HB2 A:SER52 4.9 0.0 1.0

Cadmium binding site 2 out of 4 in 6grv

Go back to Cadmium Binding Sites List in 6grv
Cadmium binding site 2 out of 4 in the Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd102

b:0.0
occ:1.00
SG A:CYS47 2.4 0.0 1.0
SG A:CYS49 2.4 0.0 1.0
SG A:CYS42 2.4 0.0 1.0
SG A:CYS10 2.5 0.0 1.0
HB2 A:CYS10 2.9 0.0 1.0
CD A:CD103 2.9 0.0 1.0
HA A:CYS10 3.1 0.0 1.0
CB A:CYS10 3.2 0.0 1.0
HB3 A:CYS47 3.3 0.0 1.0
HB3 A:CYS42 3.4 0.0 1.0
H A:HIS11 3.4 0.0 1.0
CB A:CYS47 3.5 0.0 1.0
CB A:CYS42 3.6 0.0 1.0
CA A:CYS10 3.7 0.0 1.0
HB3 A:CYS49 3.7 0.0 1.0
H A:CYS42 3.8 0.0 1.0
CB A:CYS49 3.8 0.0 1.0
H A:CYS49 3.9 0.0 1.0
HB2 A:CYS47 4.0 0.0 1.0
CD A:CD104 4.0 0.0 1.0
CD A:CD101 4.1 0.0 1.0
HB3 A:CYS10 4.2 0.0 1.0
N A:HIS11 4.2 0.0 1.0
HB1 A:ALA44 4.2 0.0 1.0
HB2 A:CYS42 4.3 0.0 1.0
SG A:CYS32 4.4 0.0 1.0
C A:CYS10 4.4 0.0 1.0
HB2 A:CYS49 4.5 0.0 1.0
N A:CYS49 4.5 0.0 1.0
N A:CYS42 4.5 0.0 1.0
CA A:CYS42 4.7 0.0 1.0
SG A:CYS12 4.7 0.0 1.0
HE1 A:HIS36 4.7 0.0 1.0
CA A:CYS47 4.8 0.0 1.0
CA A:CYS49 4.8 0.0 1.0
N A:CYS10 4.8 0.0 1.0
HB2 A:CYS12 4.8 0.0 1.0
H A:HIS48 4.9 0.0 1.0
C A:CYS47 5.0 0.0 1.0

Cadmium binding site 3 out of 4 in 6grv

Go back to Cadmium Binding Sites List in 6grv
Cadmium binding site 3 out of 4 in the Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd103

b:0.0
occ:1.00
SG A:CYS10 2.5 0.0 1.0
SG A:CYS42 2.6 0.0 1.0
SG A:CYS12 2.6 0.0 1.0
SG A:CYS28 2.6 0.0 1.0
HB2 A:CYS12 2.6 0.0 1.0
CD A:CD102 2.9 0.0 1.0
CD A:CD104 3.0 0.0 1.0
CB A:CYS12 3.1 0.0 1.0
HB2 A:CYS42 3.2 0.0 1.0
CB A:CYS42 3.3 0.0 1.0
HB3 A:CYS42 3.4 0.0 1.0
HB3 A:CYS12 3.6 0.0 1.0
CB A:CYS28 3.7 0.0 1.0
HB3 A:CYS28 3.7 0.0 1.0
HB2 A:CYS28 3.8 0.0 1.0
HB2 A:ALA44 4.0 0.0 1.0
HB1 A:ALA44 4.1 0.0 1.0
CB A:CYS10 4.2 0.0 1.0
SG A:CYS47 4.4 0.0 1.0
CA A:CYS12 4.4 0.0 1.0
HB2 A:CYS10 4.4 0.0 1.0
H A:HIS11 4.5 0.0 1.0
N A:CYS12 4.6 0.0 1.0
CB A:ALA44 4.6 0.0 1.0
SG A:CYS32 4.6 0.0 1.0
HB3 A:CYS10 4.7 0.0 1.0
HB3 A:CYS47 4.7 0.0 1.0
HB2 A:CYS47 4.7 0.0 1.0
C A:HIS11 4.7 0.0 1.0
HD2 A:PRO43 4.8 0.0 1.0
CA A:CYS42 4.8 0.0 1.0
O A:HIS11 4.8 0.0 1.0
HA A:CYS12 4.8 0.0 1.0
N A:HIS11 4.9 0.0 1.0
CB A:CYS47 4.9 0.0 1.0
H A:CYS12 4.9 0.0 1.0
SG A:CYS5 5.0 0.0 1.0

Cadmium binding site 4 out of 4 in 6grv

Go back to Cadmium Binding Sites List in 6grv
Cadmium binding site 4 out of 4 in the Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Cadmium(II) Form of Full-Length Metallothionein From Pseudomonas Fluorescens Q2-87 (PFLQ2 Mt) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd104

b:0.0
occ:1.00
SG A:CYS5 2.4 0.0 1.0
SG A:CYS10 2.5 0.0 1.0
SG A:CYS32 2.5 0.0 1.0
SG A:CYS28 2.6 0.0 1.0
CD A:CD103 3.0 0.0 1.0
HB2 A:CYS32 3.0 0.0 1.0
HB3 A:CYS7 3.1 0.0 1.0
HB3 A:CYS10 3.2 0.0 1.0
CB A:CYS32 3.2 0.0 1.0
CB A:CYS10 3.3 0.0 1.0
H A:CYS28 3.3 0.0 1.0
HB2 A:CYS10 3.3 0.0 1.0
HB3 A:CYS32 3.4 0.0 1.0
HB3 A:CYS28 3.4 0.0 1.0
HB3 A:CYS42 3.5 0.0 1.0
CB A:CYS28 3.6 0.0 1.0
HB2 A:CYS12 3.8 0.0 1.0
CB A:CYS5 3.8 0.0 1.0
HB2 A:CYS5 3.9 0.0 1.0
CD A:CD102 4.0 0.0 1.0
HB3 A:CYS5 4.1 0.0 1.0
CB A:CYS7 4.1 0.0 1.0
N A:CYS28 4.1 0.0 1.0
HB2 A:CYS7 4.2 0.0 1.0
CD A:CD101 4.2 0.0 1.0
H A:CYS7 4.2 0.0 1.0
HB2 A:CYS42 4.2 0.0 1.0
CB A:CYS42 4.2 0.0 1.0
H A:SER29 4.3 0.0 1.0
HD2 A:TYR27 4.4 0.0 1.0
HB2 A:CYS28 4.5 0.0 1.0
CA A:CYS28 4.5 0.0 1.0
SG A:CYS42 4.5 0.0 1.0
CA A:CYS32 4.7 0.0 1.0
HB3 A:TYR27 4.7 0.0 1.0
CA A:CYS10 4.7 0.0 1.0
CB A:CYS12 4.8 0.0 1.0
H A:CYS32 4.9 0.0 1.0
N A:SER29 5.0 0.0 1.0
HA A:TYR27 5.0 0.0 1.0

Reference:

J.Habjanic, O.Zerbe, E.Freisinger. A Histidine-Rich Pseudomonas Metallothionein with A Disordered Tail Displays Higher Binding Capacity For Cadmium Than Zinc. Metallomics V. 10 1415 2018.
ISSN: ESSN 1756-591X
PubMed: 30191219
DOI: 10.1039/C8MT00193F
Page generated: Sat Dec 12 08:28:30 2020

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