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Cadmium in PDB 6h8g: Mamm Ctd H264E - Cadmium Form 1

Protein crystallography data

The structure of Mamm Ctd H264E - Cadmium Form 1, PDB code: 6h8g was solved by S.Barber-Zucker, R.Zarivach, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.25 / 1.35
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 36.997, 94.499, 53.214, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 19.2

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Mamm Ctd H264E - Cadmium Form 1 (pdb code 6h8g). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Mamm Ctd H264E - Cadmium Form 1, PDB code: 6h8g:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 6h8g

Go back to Cadmium Binding Sites List in 6h8g
Cadmium binding site 1 out of 3 in the Mamm Ctd H264E - Cadmium Form 1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Mamm Ctd H264E - Cadmium Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd403

b:43.4
occ:0.50
NH1 A:ARG227 2.4 33.0 0.5
OE2 A:GLU223 2.4 33.5 0.5
OE1 A:GLU223 2.6 36.6 0.5
CD A:GLU223 2.9 33.8 0.5
CZ A:ARG227 3.4 28.4 0.5
CD A:ARG227 3.9 40.8 1.0
NE A:ARG227 4.0 32.0 0.5
NH2 A:ARG227 4.3 24.1 0.5
CG A:GLU223 4.4 29.3 0.5
OE1 A:GLU226 4.6 39.9 1.0
CG A:ARG227 4.8 36.2 1.0

Cadmium binding site 2 out of 3 in 6h8g

Go back to Cadmium Binding Sites List in 6h8g
Cadmium binding site 2 out of 3 in the Mamm Ctd H264E - Cadmium Form 1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Mamm Ctd H264E - Cadmium Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd404

b:37.5
occ:0.50
ND1 A:HIS285 1.6 32.5 0.5
CE1 A:HIS285 1.8 27.9 0.5
ND1 A:HIS285 2.4 30.2 0.5
O A:HOH546 2.5 55.7 1.0
O A:HOH504 2.5 44.4 1.0
CG A:HIS285 2.9 30.1 0.5
NE2 A:HIS285 3.0 34.7 0.5
CG A:HIS285 3.3 27.6 0.5
CE1 A:HIS285 3.3 29.7 0.5
CD2 A:HIS285 3.5 29.2 0.5
CB A:HIS285 3.5 23.5 0.5
CB A:HIS285 3.9 25.7 0.5
CA A:HIS285 4.4 19.1 0.5
CA A:HIS285 4.4 21.0 0.5
NE2 A:HIS285 4.4 34.8 0.5
CD2 A:HIS285 4.4 32.4 0.5
CD A:CD405 4.6 52.3 0.5

Cadmium binding site 3 out of 3 in 6h8g

Go back to Cadmium Binding Sites List in 6h8g
Cadmium binding site 3 out of 3 in the Mamm Ctd H264E - Cadmium Form 1


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Mamm Ctd H264E - Cadmium Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd405

b:52.3
occ:0.50
CD2 A:HIS285 1.8 29.2 0.5
OD1 A:ASP249 2.0 32.8 0.5
NE2 A:HIS285 2.5 34.7 0.5
CG A:HIS285 2.8 30.1 0.5
CG A:ASP249 3.0 27.7 0.5
OD2 A:ASP249 3.3 34.9 0.5
CE1 A:HIS285 3.5 27.9 0.5
CB A:HIS285 3.6 25.7 0.5
ND1 A:HIS285 3.6 32.5 0.5
CB A:HIS285 3.7 23.5 0.5
OD1 A:ASP249 3.9 28.9 0.5
O A:HOH514 4.0 30.1 1.0
CG A:HIS285 4.1 27.6 0.5
ND1 A:HIS285 4.2 30.2 0.5
CG A:ASP249 4.3 26.9 0.5
CB A:ASP249 4.4 22.0 0.5
CB A:ASP249 4.5 22.1 0.5
CD A:CD404 4.6 37.5 0.5
CD2 A:HIS285 4.9 32.4 0.5
O A:HOH546 5.0 55.7 1.0
OD2 A:ASP249 5.0 31.8 0.5

Reference:

S.Barber-Zucker, R.Zarivach. Mamm Ctd H264E - Cadmium Form 1 To Be Published.
Page generated: Sat Dec 12 08:28:35 2020

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