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Cadmium in PDB 6i31: Crystal Structure of the Tick Chemokine-Binding Protein Evasin-3

Protein crystallography data

The structure of Crystal Structure of the Tick Chemokine-Binding Protein Evasin-3, PDB code: 6i31 was solved by J.M.Dias, J.P.Shaw, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.40 / 1.79
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 55.090, 55.090, 71.040, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 21.3

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of the Tick Chemokine-Binding Protein Evasin-3 (pdb code 6i31). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of the Tick Chemokine-Binding Protein Evasin-3, PDB code: 6i31:

Cadmium binding site 1 out of 1 in 6i31

Go back to Cadmium Binding Sites List in 6i31
Cadmium binding site 1 out of 1 in the Crystal Structure of the Tick Chemokine-Binding Protein Evasin-3


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Tick Chemokine-Binding Protein Evasin-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:27.0
occ:1.00
OE1 A:GLU60 2.2 20.5 1.0
O A:LEU57 2.3 23.2 1.0
OE2 A:GLU60 2.5 28.7 1.0
CD A:GLU60 2.7 36.9 1.0
C A:LEU57 3.4 24.5 1.0
CA A:SER58 3.7 24.9 1.0
N A:SER58 4.0 25.0 1.0
CG A:GLU60 4.2 27.0 1.0
N A:LEU57 4.4 20.7 1.0
O A:HOH227 4.4 45.7 1.0
CB A:SER58 4.5 31.0 1.0
CA A:LEU57 4.5 19.5 1.0
C A:SER58 4.7 29.0 1.0
OD1 A:ASN56 4.8 29.0 1.0
CB A:ASN56 4.9 20.2 1.0
N A:GLY59 5.0 24.9 1.0

Reference:

A.W.Lee, M.Deruaz, C.Lynch, G.Davies, K.Singh, Y.Alenazi, J.R.O.Eaton, A.Kawamura, J.Shaw, A.E.I.Proudfoot, J.M.Dias, S.Bhattacharya. A Knottin Scaffold Directs the Cxc-Chemokine-Binding Specificity of Tick Evasins. J.Biol.Chem. V. 294 11199 2019.
ISSN: ESSN 1083-351X
PubMed: 31167786
DOI: 10.1074/JBC.RA119.008817
Page generated: Sat Dec 12 08:28:41 2020

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