Cadmium in PDB 6inr: The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1)

The structure of The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1), PDB code: 6inr was solved by Y.T.Liao, S.S.Lin, T.P.Ko, H.C.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.34
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	65.006, 65.006, 193.432, 90.00, 90.00, 120.00
R / Rfree (%)	25.6 / 27

The binding sites of Cadmium atom in the The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1) (pdb code 6inr). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1), PDB code: 6inr:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd101 b:1.0 occ:1.00 O A:HOH213 1.4 0.0 1.0 OD2 A:ASP51 3.2 0.7 1.0 OD1 A:ASP51 3.4 0.6 1.0 CG A:ASP51 3.7 0.5 1.0

Cadmium binding site 2 out of 3 in the The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd102 b:78.3 occ:1.00 ND1 A:HIS16 2.6 41.0 1.0 CE1 A:HIS16 3.4 42.1 1.0 CG A:HIS16 3.6 38.1 1.0 CB A:HIS16 3.9 33.0 1.0 CA A:HIS16 4.4 28.2 1.0 NE2 A:HIS16 4.6 42.1 1.0 O A:HOH201 4.6 74.2 1.0 CD2 A:HIS16 4.7 41.2 1.0

Cadmium binding site 3 out of 3 in the The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of The Crystal Structure of Phytoplasmal Effector Causing Phyllody Symptoms 1 (PHYL1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd501 b:0.3 occ:1.00 OE2 B:GLU22 2.8 44.4 1.0 OE1 B:GLU22 2.9 40.3 1.0 CD B:GLU22 3.2 37.6 1.0 O B:HOH660 4.5 44.5 1.0 CG B:GLU22 4.7 33.7 1.0 CG2 B:THR19 4.8 23.3 1.0 CD2 B:LEU18 4.9 39.6 1.0

Y.T.Liao, S.S.Lin, S.J.Lin, W.T.Sun, B.N.Shen, H.P.Cheng, C.P.Lin, T.P.Ko, Y.F.Chen, H.C.Wang. Structural Insights Into the Interaction Between Phytoplasmal Effector Causing Phyllody 1 and Mads Transcription Factors. Plant J. V. 100 706 2019.
ISSN: ESSN 1365-313X
PubMed: 31323156
DOI: 10.1111/TPJ.14463