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Cadmium in PDB 6nzi: Low Resolution Crystal Structure of the Bacterial Multidrug Efflux Transporter Acrb in the Presence of Cadmium

Protein crystallography data

The structure of Low Resolution Crystal Structure of the Bacterial Multidrug Efflux Transporter Acrb in the Presence of Cadmium, PDB code: 6nzi was solved by A.T.Smith, A.C.Rosenzweig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.80 / 4.44
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 144.280, 144.280, 519.520, 90.00, 90.00, 120.00
R / Rfree (%) 26 / 32

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Low Resolution Crystal Structure of the Bacterial Multidrug Efflux Transporter Acrb in the Presence of Cadmium (pdb code 6nzi). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Low Resolution Crystal Structure of the Bacterial Multidrug Efflux Transporter Acrb in the Presence of Cadmium, PDB code: 6nzi:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 6nzi

Go back to Cadmium Binding Sites List in 6nzi
Cadmium binding site 1 out of 2 in the Low Resolution Crystal Structure of the Bacterial Multidrug Efflux Transporter Acrb in the Presence of Cadmium


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Low Resolution Crystal Structure of the Bacterial Multidrug Efflux Transporter Acrb in the Presence of Cadmium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1101

b:0.4
occ:1.00
OE2 A:GLU521 2.5 0.3 1.0
NE2 A:HIS505 2.6 0.9 1.0
CE1 A:HIS505 3.0 1.0 1.0
OE1 A:GLU521 3.1 0.7 1.0
CD A:GLU521 3.2 0.5 1.0
CD2 A:HIS505 3.3 0.5 1.0
ND1 A:HIS505 3.8 0.8 1.0
OE1 A:GLU422 3.9 0.5 1.0
CG A:HIS505 3.9 0.0 1.0
NH1 A:ARG973 4.2 0.1 1.0
CG A:ARG418 4.5 0.2 1.0
CG A:GLU521 4.6 0.2 1.0
CD A:ARG418 4.9 0.5 1.0

Cadmium binding site 2 out of 2 in 6nzi

Go back to Cadmium Binding Sites List in 6nzi
Cadmium binding site 2 out of 2 in the Low Resolution Crystal Structure of the Bacterial Multidrug Efflux Transporter Acrb in the Presence of Cadmium


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Low Resolution Crystal Structure of the Bacterial Multidrug Efflux Transporter Acrb in the Presence of Cadmium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1102

b:0.9
occ:1.00
NE2 A:HIS525 2.5 0.1 1.0
CD2 A:HIS525 2.7 1.0 1.0
OD2 A:ASP529 2.8 0.2 1.0
CG A:ASP529 3.3 0.8 1.0
OD1 A:ASP529 3.4 0.9 1.0
OG1 A:THR528 3.7 0.9 1.0
CE1 A:HIS525 3.7 0.8 1.0
NH2 A:ARG969 3.7 1.0 1.0
CG A:HIS525 3.9 0.1 1.0
ND1 A:HIS525 4.4 0.4 1.0
CB A:ASP529 4.4 0.8 1.0
CZ A:ARG969 4.6 0.8 1.0
CB A:THR528 4.6 0.3 1.0
O A:HIS525 4.6 0.4 1.0
N A:ASP529 5.0 0.1 1.0

Reference:

A.T.Smith, A.C.Rosenzweig. Low Resolution Crystal Structure of the Bacterial Multidrug Efflux Transporter Acrb in the Presence of Cadmium To Be Published.
Page generated: Sat Dec 12 08:28:51 2020

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