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Cadmium in PDB 6og0: Structure of Aedes Aegypti OBP22

Protein crystallography data

The structure of Structure of Aedes Aegypti OBP22, PDB code: 6og0 was solved by D.N.Jones, J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.86 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 55.775, 43.046, 48.416, 90.00, 91.73, 90.00
R / Rfree (%) 18.3 / 21.9

Other elements in 6og0:

The structure of Structure of Aedes Aegypti OBP22 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Structure of Aedes Aegypti OBP22 (pdb code 6og0). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Structure of Aedes Aegypti OBP22, PDB code: 6og0:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 6og0

Go back to Cadmium Binding Sites List in 6og0
Cadmium binding site 1 out of 3 in the Structure of Aedes Aegypti OBP22


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of Aedes Aegypti OBP22 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd201

b:16.5
occ:1.00
NE2 A:HIS99 2.2 11.7 1.0
OD1 A:ASP41 2.2 20.2 1.0
CG A:ASP41 2.9 20.0 1.0
OD2 A:ASP41 2.9 19.2 1.0
CE1 A:HIS99 2.9 12.8 1.0
CD2 A:HIS99 3.3 12.4 1.0
ND2 A:ASN96 4.1 13.9 1.0
ND1 A:HIS99 4.1 12.2 1.0
CE A:MET44 4.3 14.4 0.5
CB A:ASP41 4.3 19.4 1.0
CG A:HIS99 4.3 11.9 1.0
O A:HOH388 4.8 20.9 1.0
CA A:ASP41 5.0 19.1 1.0

Cadmium binding site 2 out of 3 in 6og0

Go back to Cadmium Binding Sites List in 6og0
Cadmium binding site 2 out of 3 in the Structure of Aedes Aegypti OBP22


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of Aedes Aegypti OBP22 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd202

b:24.8
occ:1.00
O A:HOH396 2.3 24.4 1.0
OE2 A:GLU9 2.4 22.6 1.0
OE1 A:GLU9 2.4 20.6 1.0
CD A:GLU9 2.7 22.7 1.0
CG A:GLU9 4.2 23.0 1.0
O A:HOH364 4.5 26.5 1.0

Cadmium binding site 3 out of 3 in 6og0

Go back to Cadmium Binding Sites List in 6og0
Cadmium binding site 3 out of 3 in the Structure of Aedes Aegypti OBP22


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Structure of Aedes Aegypti OBP22 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd203

b:0.7
occ:1.00
ND1 A:HIS74 2.8 35.9 1.0
CE1 A:HIS74 3.7 35.8 1.0
CG A:HIS74 3.8 33.2 1.0
O A:HOH346 4.0 30.9 1.0
CA A:HIS74 4.0 28.5 1.0
CB A:HIS74 4.0 31.4 1.0
CB A:LYS117 4.1 47.7 1.0
N A:LYS117 4.6 45.2 1.0
O A:HOH315 4.6 33.0 1.0
CA A:LYS117 4.7 47.0 1.0
NE2 A:HIS74 4.8 35.5 1.0
C A:HIS74 4.9 26.3 1.0
CD2 A:HIS74 4.9 33.8 1.0

Reference:

D.N.Jones, J.Wang. Structure of Aedes Aegypti OBP22 To Be Published.
Page generated: Sat Dec 12 08:28:52 2020

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