Cadmium in PDB 6ozy: Wild Type Gapr Crystal Structure 2 From C. Crescentus

The structure of Wild Type Gapr Crystal Structure 2 From C. Crescentus, PDB code: 6ozy was solved by M.Tarry, C.Harmel, J.A.Taylor, G.T.Marczynski, T.M.Schmeing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.97 / 2.01
Space group	P 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	39.770, 59.370, 93.940, 90.00, 90.00, 90.00
R / Rfree (%)	23.3 / 27.3

The binding sites of Cadmium atom in the Wild Type Gapr Crystal Structure 2 From C. Crescentus (pdb code 6ozy). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Wild Type Gapr Crystal Structure 2 From C. Crescentus, PDB code: 6ozy:

Cadmium binding site 1 out of 1 in the Wild Type Gapr Crystal Structure 2 From C. Crescentus


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Wild Type Gapr Crystal Structure 2 From C. Crescentus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd101 b:41.9 occ:1.00 OD2 A:ASP76 2.6 33.0 1.0 OD2 A:ASP80 2.8 55.2 1.0 OD1 A:ASP80 2.8 33.5 1.0 OD1 A:ASP76 3.1 38.9 1.0 CG A:ASP80 3.1 45.8 1.0 CG A:ASP76 3.2 43.4 1.0 O A:ASP76 4.5 43.6 1.0 CB A:ASP80 4.6 40.9 1.0 CB A:ASP76 4.7 41.8 1.0 HD23 A:LEU79 4.7 43.5 1.0 HB3 A:ASP80 4.9 49.0 1.0 HB3 A:ASP76 5.0 50.2 1.0

M.J.Tarry, C.Harmel, J.A.Taylor, G.T.Marczynski, T.M.Schmeing. Structures of Gapr Reveal A Central Channel Which Could Accommodate B-Dna. Sci Rep V. 9 16679 2019.
ISSN: ESSN 2045-2322
PubMed: 31723182
DOI: 10.1038/S41598-019-52964-2