Cadmium in PDB 6p7a: Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase

The structure of Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase, PDB code: 6p7a was solved by N.Li, K.Shi, S.Banerjee, T.Rao, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.85 / 3.08
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	82.620, 82.620, 68.756, 90.00, 90.00, 120.00
R / Rfree (%)	27.1 / 27.9

The binding sites of Cadmium atom in the Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase (pdb code 6p7a). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 6 binding sites of Cadmium where determined in the Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase, PDB code: 6p7a:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6;

Cadmium binding site 1 out of 6 in the Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:0.0 occ:1.00 CD A:CD202 2.7 0.1 1.0 OE2 A:GLU60 2.7 0.7 1.0 OE1 A:GLU60 2.8 0.5 1.0 CD A:GLU60 3.1 0.7 1.0 OD1 A:ASP7 3.4 0.1 1.0 NE2 A:GLN62 4.1 0.1 1.0 CG A:ASP7 4.4 0.7 1.0 CG A:GLU60 4.6 0.2 1.0 ND2 A:ASN135 4.7 0.7 1.0 OD2 A:ASP7 4.7 0.2 1.0 CG A:ASN135 5.0 0.5 1.0

Cadmium binding site 2 out of 6 in the Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:0.1 occ:1.00 OD2 A:ASP7 2.7 0.2 1.0 CD A:CD201 2.7 0.0 1.0 OD1 A:ASP132 2.8 0.2 1.0 OD1 A:ASP7 2.8 0.1 1.0 CG A:ASP7 3.1 0.7 1.0 CG A:ASP132 3.7 0.4 1.0 ND2 A:ASN135 3.7 0.7 1.0 OE1 A:GLU60 4.4 0.5 1.0 OD2 A:ASP132 4.5 0.3 1.0 O A:ILE8 4.5 0.7 1.0 CB A:ASP132 4.5 0.4 1.0 CG A:ASN135 4.6 0.5 1.0 CB A:ASP7 4.6 0.9 1.0 CA A:ASP132 4.7 0.1 1.0 CB A:ASN135 4.8 0.6 1.0

Cadmium binding site 3 out of 6 in the Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:0.2 occ:1.00 OD2 A:ASP55 3.1 0.3 1.0 OD1 A:ASP55 3.5 0.8 1.0 CG A:ASP55 3.7 0.6 1.0 CD1 A:ILE2 4.6 0.7 1.0 CG1 A:ILE2 4.8 0.0 1.0 CA A:MET1 4.8 0.9 1.0 N A:MET1 4.9 0.4 1.0 N A:ILE2 5.0 0.5 1.0

Cadmium binding site 4 out of 6 in the Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd201 b:0.1 occ:1.00 CD B:CD202 2.7 0.4 1.0 NE2 B:GLN62 3.0 0.9 1.0 OD1 B:ASP7 3.0 0.8 1.0 OE1 B:GLU60 3.3 0.7 1.0 OE2 B:GLU60 3.6 0.9 1.0 CD B:GLU60 3.7 0.9 1.0 CG B:ASP7 4.0 0.3 1.0 CD B:GLN62 4.0 0.1 1.0 OD2 B:ASP7 4.1 0.0 1.0 O B:ILE8 4.3 0.1 1.0 OE1 B:GLN62 4.7 1.0 1.0 CG B:GLN62 4.8 0.4 1.0 ND2 B:ASN135 5.0 0.8 1.0

Cadmium binding site 5 out of 6 in the Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd202 b:0.4 occ:1.00 CD B:CD201 2.7 0.1 1.0 OD1 B:ASP7 3.1 0.8 1.0 OD2 B:ASP7 3.2 0.0 1.0 CG B:ASP7 3.5 0.3 1.0 O B:ILE8 4.0 0.1 1.0 O B:ASN12 4.3 0.9 1.0 ND2 B:ASN135 4.6 0.8 1.0 C B:ILE8 4.8 0.0 1.0 NE2 B:GLN62 4.8 0.9 1.0 CB B:ASP132 4.8 0.4 1.0 CB B:ASP7 4.9 0.8 1.0

Cadmium binding site 6 out of 6 in the Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of the Fowlpox Virus Holliday Junction Resolvase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd203 b:0.3 occ:1.00 OD2 B:ASP55 3.5 0.3 1.0 OD1 B:ASP55 3.6 0.1 1.0 CG B:ASP55 3.9 0.3 1.0 CD1 B:ILE2 4.1 1.0 1.0 CG1 B:ILE2 4.5 0.5 1.0 O B:ASN53 4.7 0.2 1.0

N.Li, K.Shi, T.Rao, S.Banerjee, H.Aihara. Structural Insights Into the Promiscuous Dna Binding and Broad Substrate Selectivity of Fowlpox Virus Resolvase. Sci Rep V. 10 393 2020.
ISSN: ESSN 2045-2322
PubMed: 31941902
DOI: 10.1038/S41598-019-56825-W