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Cadmium in PDB 6pgi: Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters

Protein crystallography data

The structure of Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters, PDB code: 6pgi was solved by T.Zhang, D.Sui, C.Zhang, T.Logan, J.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 3.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 96.782, 61.274, 54.753, 90.00, 108.80, 90.00
R / Rfree (%) 27.1 / 32

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters (pdb code 6pgi). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters, PDB code: 6pgi:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 6pgi

Go back to Cadmium Binding Sites List in 6pgi
Cadmium binding site 1 out of 2 in the Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd401

b:86.0
occ:1.00
CA A:GLY122 3.9 63.7 1.0
N A:GLY122 4.3 68.2 1.0
CD A:PRO123 4.7 66.2 1.0
C A:GLY122 4.9 59.8 1.0

Cadmium binding site 2 out of 2 in 6pgi

Go back to Cadmium Binding Sites List in 6pgi
Cadmium binding site 2 out of 2 in the Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd402

b:52.7
occ:1.00
OE1 A:GLU211 2.4 42.9 1.0
OE2 A:GLU211 2.4 42.9 1.0
OE2 A:GLU181 2.4 47.7 1.0
NE2 A:HIS177 2.4 46.1 1.0
OE1 A:GLN207 2.4 41.9 1.0
OE1 A:GLU181 2.4 47.7 1.0
SD A:MET99 2.5 45.0 1.0
CD A:GLU211 2.7 42.9 1.0
CD A:GLU181 2.7 47.7 1.0
CE A:MET99 2.8 45.0 1.0
CD A:GLN207 3.2 41.9 1.0
CE1 A:HIS177 3.2 46.1 1.0
NE2 A:GLN207 3.3 41.9 1.0
CD2 A:HIS177 3.4 46.1 1.0
CG A:MET99 3.6 45.0 1.0
CG A:GLU181 4.1 47.7 1.0
CG A:GLU211 4.2 42.9 1.0
ND1 A:HIS177 4.4 46.1 1.0
CG A:HIS177 4.5 46.1 1.0
CG A:GLN207 4.6 41.9 1.0
CB A:ALA95 4.9 50.4 1.0
CB A:MET99 5.0 45.0 1.0

Reference:

T.Zhang, D.Sui, C.Zhang, T.Logan, J.Hu. Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters Faseb J. 2019.
ISSN: ESSN 1530-6860
DOI: 10.1096/FJ.201902043R
Page generated: Sat Dec 12 08:29:00 2020

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