Cadmium in PDB 6pgi: Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters

The structure of Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters, PDB code: 6pgi was solved by T.Zhang, D.Sui, C.Zhang, T.Logan, J.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 3.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	96.782, 61.274, 54.753, 90.00, 108.80, 90.00
R / Rfree (%)	27.1 / 32

The binding sites of Cadmium atom in the Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters (pdb code 6pgi). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters, PDB code: 6pgi:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd401 b:86.0 occ:1.00 CA A:GLY122 3.9 63.7 1.0 N A:GLY122 4.3 68.2 1.0 CD A:PRO123 4.7 66.2 1.0 C A:GLY122 4.9 59.8 1.0

Cadmium binding site 2 out of 2 in the Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd402 b:52.7 occ:1.00 OE1 A:GLU211 2.4 42.9 1.0 OE2 A:GLU211 2.4 42.9 1.0 OE2 A:GLU181 2.4 47.7 1.0 NE2 A:HIS177 2.4 46.1 1.0 OE1 A:GLN207 2.4 41.9 1.0 OE1 A:GLU181 2.4 47.7 1.0 SD A:MET99 2.5 45.0 1.0 CD A:GLU211 2.7 42.9 1.0 CD A:GLU181 2.7 47.7 1.0 CE A:MET99 2.8 45.0 1.0 CD A:GLN207 3.2 41.9 1.0 CE1 A:HIS177 3.2 46.1 1.0 NE2 A:GLN207 3.3 41.9 1.0 CD2 A:HIS177 3.4 46.1 1.0 CG A:MET99 3.6 45.0 1.0 CG A:GLU181 4.1 47.7 1.0 CG A:GLU211 4.2 42.9 1.0 ND1 A:HIS177 4.4 46.1 1.0 CG A:HIS177 4.5 46.1 1.0 CG A:GLN207 4.6 41.9 1.0 CB A:ALA95 4.9 50.4 1.0 CB A:MET99 5.0 45.0 1.0

T.Zhang, D.Sui, C.Zhang, T.Logan, J.Hu. Asymmetric Functions of A Binuclear Metal Cluster Within the Transport Pathway of the Zip Transition Metal Transporters Faseb J. 2019.
ISSN: ESSN 1530-6860
DOI: 10.1096/FJ.201902043R