Atomistry » Cadmium » PDB 6p7a-6w86 » 6qk6
Atomistry »
  Cadmium »
    PDB 6p7a-6w86 »
      6qk6 »

Cadmium in PDB 6qk6: Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia (pdb code 6qk6). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 6 binding sites of Cadmium where determined in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia, PDB code: 6qk6:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6;

Cadmium binding site 1 out of 6 in 6qk6

Go back to Cadmium Binding Sites List in 6qk6
Cadmium binding site 1 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:0.0
occ:1.00
SG A:CYS14 2.6 0.0 1.0
SG A:CYS31 2.6 0.0 1.0
SG A:CYS10 2.7 0.0 1.0
SG A:CYS27 2.7 0.0 1.0
HB2 A:CYS31 2.9 0.0 1.0
HD2 A:LYS6 3.0 0.0 1.0
HB3 A:CYS27 3.1 0.0 1.0
HB3 A:CYS10 3.2 0.0 1.0
HB3 A:CYS14 3.2 0.0 1.0
HA A:CYS10 3.3 0.0 1.0
CB A:CYS14 3.3 0.0 1.0
HB2 A:CYS14 3.3 0.0 1.0
CB A:CYS31 3.4 0.0 1.0
CB A:CYS10 3.4 0.0 1.0
CB A:CYS27 3.4 0.0 1.0
H A:THR11 3.8 0.0 1.0
CA A:CYS10 3.9 0.0 1.0
HB2 A:CYS27 3.9 0.0 1.0
HB3 A:CYS31 4.0 0.0 1.0
HB3 A:CYS33 4.0 0.0 1.0
CD A:LYS6 4.1 0.0 1.0
CD A:CD102 4.1 0.0 1.0
CD A:CD103 4.1 0.0 1.0
HB3 A:LYS6 4.1 0.0 1.0
HZ2 A:LYS6 4.1 0.0 1.0
SG A:CYS36 4.2 0.0 1.0
HB2 A:CYS33 4.3 0.0 1.0
HA A:CYS31 4.4 0.0 1.0
HB2 A:CYS10 4.4 0.0 1.0
HD3 A:LYS6 4.4 0.0 1.0
H A:GLY7 4.5 0.0 1.0
CA A:CYS31 4.5 0.0 1.0
HE2 A:LYS6 4.7 0.0 1.0
N A:THR11 4.7 0.0 1.0
HE3 A:LYS37 4.7 0.0 1.0
CB A:CYS33 4.7 0.0 1.0
HA A:CYS27 4.7 0.0 1.0
HG3 A:LYS6 4.7 0.0 1.0
CA A:CYS27 4.7 0.0 1.0
CE A:LYS6 4.8 0.0 1.0
CA A:CYS14 4.8 0.0 1.0
CG A:LYS6 4.8 0.0 1.0
H A:CYS33 4.9 0.0 1.0
C A:CYS10 4.9 0.0 1.0
N A:CYS10 4.9 0.0 1.0
NZ A:LYS6 4.9 0.0 1.0
CB A:LYS6 5.0 0.0 1.0

Cadmium binding site 2 out of 6 in 6qk6

Go back to Cadmium Binding Sites List in 6qk6
Cadmium binding site 2 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd102

b:0.0
occ:1.00
SG A:CYS14 2.5 0.0 1.0
SG A:CYS19 2.5 0.0 1.0
SG A:CYS36 2.6 0.0 1.0
SG A:CYS33 2.6 0.0 1.0
HB3 A:CYS33 2.6 0.0 1.0
CB A:CYS33 3.1 0.0 1.0
HB2 A:ALA35 3.2 0.0 1.0
HB2 A:CYS14 3.3 0.0 1.0
HZ2 A:LYS6 3.3 0.0 1.0
HA A:CYS14 3.4 0.0 1.0
CB A:CYS14 3.4 0.0 1.0
HB2 A:CYS33 3.4 0.0 1.0
H A:CYS36 3.6 0.0 1.0
HB3 A:CYS36 3.7 0.0 1.0
CB A:CYS36 3.9 0.0 1.0
CA A:CYS14 3.9 0.0 1.0
CD A:CD103 3.9 0.0 1.0
HB2 A:CYS19 4.0 0.0 1.0
HZ1 A:LYS6 4.0 0.0 1.0
CB A:CYS19 4.0 0.0 1.0
CD A:CD101 4.1 0.0 1.0
NZ A:LYS6 4.1 0.0 1.0
HE2 A:LYS6 4.1 0.0 1.0
N A:CYS36 4.2 0.0 1.0
CB A:ALA35 4.3 0.0 1.0
HB2 A:CYS21 4.4 0.0 1.0
O A:CYS14 4.4 0.0 1.0
HB3 A:CYS14 4.4 0.0 1.0
SG A:CYS31 4.5 0.0 1.0
CA A:CYS33 4.5 0.0 1.0
O A:CYS33 4.5 0.0 1.0
SG A:CYS21 4.5 0.0 1.0
HD2 A:LYS6 4.5 0.0 1.0
HB3 A:CYS19 4.5 0.0 1.0
H A:ALA35 4.6 0.0 1.0
C A:CYS14 4.6 0.0 1.0
CE A:LYS6 4.6 0.0 1.0
HB1 A:ALA35 4.6 0.0 1.0
HB2 A:CYS36 4.7 0.0 1.0
CA A:CYS36 4.7 0.0 1.0
C A:CYS33 4.7 0.0 1.0
HB3 A:ALA35 4.8 0.0 1.0
C A:ALA35 4.9 0.0 1.0
HZ3 A:LYS6 4.9 0.0 1.0
HA A:CYS19 5.0 0.0 1.0
CA A:ALA35 5.0 0.0 1.0

Cadmium binding site 3 out of 6 in 6qk6

Go back to Cadmium Binding Sites List in 6qk6
Cadmium binding site 3 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd103

b:0.0
occ:1.00
SG A:CYS36 2.5 0.0 1.0
SG A:CYS27 2.7 0.0 1.0
HB2 A:CYS36 2.7 0.0 1.0
SG A:CYS21 2.7 0.0 1.0
SG A:CYS25 2.7 0.0 1.0
HB2 A:CYS14 2.7 0.0 1.0
HB3 A:CYS21 2.9 0.0 1.0
CB A:CYS36 2.9 0.0 1.0
HB3 A:CYS36 3.0 0.0 1.0
CB A:CYS21 3.2 0.0 1.0
HB2 A:CYS21 3.3 0.0 1.0
HG1 A:THR11 3.4 0.0 1.0
HB2 A:CYS27 3.4 0.0 1.0
HA A:CYS25 3.6 0.0 1.0
CB A:CYS27 3.7 0.0 1.0
H A:CYS27 3.7 0.0 1.0
CB A:CYS14 3.8 0.0 1.0
H A:GLN26 3.8 0.0 1.0
CB A:CYS25 3.9 0.0 1.0
HB2 A:CYS25 3.9 0.0 1.0
CD A:CD102 3.9 0.0 1.0
CD A:CD101 4.1 0.0 1.0
OG1 A:THR11 4.2 0.0 1.0
CA A:CYS25 4.2 0.0 1.0
HB3 A:CYS14 4.3 0.0 1.0
HG22 A:THR11 4.3 0.0 1.0
SG A:CYS14 4.4 0.0 1.0
HB3 A:CYS27 4.4 0.0 1.0
N A:CYS27 4.4 0.0 1.0
CA A:CYS36 4.5 0.0 1.0
H A:THR11 4.5 0.0 1.0
SG A:CYS19 4.6 0.0 1.0
N A:GLN26 4.6 0.0 1.0
HA A:CYS14 4.6 0.0 1.0
HG21 A:THR11 4.6 0.0 1.0
CA A:CYS21 4.6 0.0 1.0
CA A:CYS27 4.7 0.0 1.0
CA A:CYS14 4.7 0.0 1.0
H A:CYS14 4.7 0.0 1.0
HB3 A:CYS25 4.8 0.0 1.0
CG2 A:THR11 4.9 0.0 1.0
HA A:CYS21 4.9 0.0 1.0
C A:CYS25 5.0 0.0 1.0
SG A:CYS31 5.0 0.0 1.0
HA A:CYS36 5.0 0.0 1.0
N A:CYS14 5.0 0.0 1.0

Cadmium binding site 4 out of 6 in 6qk6

Go back to Cadmium Binding Sites List in 6qk6
Cadmium binding site 4 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd104

b:0.0
occ:1.00
SG A:CYS39 2.5 0.0 1.0
SG A:CYS58 2.6 0.0 1.0
HZ2 A:LYS67 2.6 0.0 1.0
SG A:CYS66 2.7 0.0 1.0
SG A:CYS52 2.7 0.0 1.0
HZ1 A:LYS67 3.0 0.0 1.0
NZ A:LYS67 3.1 0.0 1.0
HZ3 A:LYS67 3.2 0.0 1.0
HB2 A:CYS39 3.4 0.0 1.0
HB2 A:CYS52 3.5 0.0 1.0
HB2 A:CYS58 3.5 0.0 1.0
CB A:CYS39 3.6 0.0 1.0
CB A:CYS58 3.7 0.0 1.0
CD A:CD105 3.7 0.0 1.0
CB A:CYS52 3.7 0.0 1.0
HB2 A:CYS66 3.7 0.0 1.0
HB2 A:CYS41 3.8 0.0 1.0
SG A:CYS60 3.8 0.0 1.0
CB A:CYS66 3.9 0.0 1.0
HA A:CYS58 3.9 0.0 1.0
HA A:CYS39 4.0 0.0 1.0
HB2 A:CYS60 4.0 0.0 1.0
CD A:CD106 4.0 0.0 1.0
H A:CYS41 4.1 0.0 1.0
H A:ASN40 4.1 0.0 1.0
HB3 A:CYS66 4.2 0.0 1.0
HB3 A:CYS52 4.3 0.0 1.0
SG A:CYS41 4.3 0.0 1.0
H A:GLY54 4.4 0.0 1.0
CA A:CYS58 4.4 0.0 1.0
CA A:CYS39 4.4 0.0 1.0
HB3 A:CYS39 4.5 0.0 1.0
CB A:CYS60 4.6 0.0 1.0
CE A:LYS67 4.6 0.0 1.0
HB3 A:CYS58 4.6 0.0 1.0
CB A:CYS41 4.6 0.0 1.0
H A:CYS60 4.6 0.0 1.0
HE3 A:LYS67 4.9 0.0 1.0
HB2 A:LYS50 4.9 0.0 1.0
SG A:CYS48 4.9 0.0 1.0
N A:ASN40 4.9 0.0 1.0
CA A:CYS52 5.0 0.0 1.0
HE2 A:LYS67 5.0 0.0 1.0

Cadmium binding site 5 out of 6 in 6qk6

Go back to Cadmium Binding Sites List in 6qk6
Cadmium binding site 5 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd105

b:0.0
occ:1.00
SG A:CYS66 2.5 0.0 1.0
SG A:CYS64 2.5 0.0 1.0
SG A:CYS60 2.7 0.0 1.0
SG A:CYS48 2.7 0.0 1.0
HG3 A:LYS50 3.0 0.0 1.0
H A:CYS66 3.2 0.0 1.0
HB3 A:CYS64 3.3 0.0 1.0
HB2 A:CYS48 3.3 0.0 1.0
HG2 A:LYS50 3.4 0.0 1.0
HZ3 A:LYS67 3.4 0.0 1.0
HB3 A:CYS48 3.4 0.0 1.0
CB A:CYS48 3.4 0.0 1.0
HB3 A:CYS60 3.5 0.0 1.0
HB2 A:LYS50 3.5 0.0 1.0
HB3 A:CYS66 3.6 0.0 1.0
CB A:CYS64 3.6 0.0 1.0
CG A:LYS50 3.6 0.0 1.0
CB A:CYS60 3.6 0.0 1.0
CB A:CYS66 3.7 0.0 1.0
CD A:CD104 3.7 0.0 1.0
HB2 A:CYS60 3.8 0.0 1.0
HB2 A:CYS64 4.0 0.0 1.0
CD A:CD106 4.0 0.0 1.0
N A:CYS66 4.1 0.0 1.0
CB A:LYS50 4.1 0.0 1.0
SG A:CYS52 4.1 0.0 1.0
HZ2 A:LYS67 4.2 0.0 1.0
NZ A:LYS67 4.2 0.0 1.0
H A:SER65 4.3 0.0 1.0
H A:LYS50 4.4 0.0 1.0
HG2 A:LYS67 4.4 0.0 1.0
HB2 A:CYS66 4.5 0.0 1.0
CA A:CYS66 4.5 0.0 1.0
N A:SER65 4.7 0.0 1.0
HB2 A:SER65 4.7 0.0 1.0
HZ1 A:LYS67 4.7 0.0 1.0
HB3 A:LYS50 4.7 0.0 1.0
CA A:CYS64 4.9 0.0 1.0
CA A:CYS48 4.9 0.0 1.0
H A:CYS60 4.9 0.0 1.0
CD A:LYS50 4.9 0.0 1.0
SG A:CYS58 4.9 0.0 1.0
HD2 A:LYS50 5.0 0.0 1.0
C A:CYS64 5.0 0.0 1.0

Cadmium binding site 6 out of 6 in 6qk6

Go back to Cadmium Binding Sites List in 6qk6
Cadmium binding site 6 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd106

b:0.0
occ:1.00
SG A:CYS48 2.5 0.0 1.0
SG A:CYS46 2.5 0.0 1.0
SG A:CYS52 2.5 0.0 1.0
H A:CYS48 2.5 0.0 1.0
SG A:CYS41 2.6 0.0 1.0
H A:GLY49 2.8 0.0 1.0
H A:LYS50 3.0 0.0 1.0
H A:CYS52 3.0 0.0 1.0
H A:LYS47 3.1 0.0 1.0
HB3 A:CYS48 3.1 0.0 1.0
CB A:CYS48 3.3 0.0 1.0
N A:CYS48 3.4 0.0 1.0
HB2 A:LYS50 3.5 0.0 1.0
O A:CYS52 3.6 0.0 1.0
CB A:CYS41 3.7 0.0 1.0
HB2 A:CYS41 3.7 0.0 1.0
N A:GLY49 3.7 0.0 1.0
HB3 A:CYS41 3.8 0.0 1.0
CA A:CYS48 3.8 0.0 1.0
N A:CYS52 3.8 0.0 1.0
N A:LYS47 3.8 0.0 1.0
H A:GLU51 3.9 0.0 1.0
HA A:CYS46 3.9 0.0 1.0
N A:LYS50 3.9 0.0 1.0
CB A:CYS46 3.9 0.0 1.0
HB3 A:CYS66 4.0 0.0 1.0
CB A:CYS52 4.0 0.0 1.0
CD A:CD105 4.0 0.0 1.0
CD A:CD104 4.0 0.0 1.0
HB2 A:CYS46 4.2 0.0 1.0
C A:CYS48 4.2 0.0 1.0
CA A:CYS52 4.3 0.0 1.0
HB2 A:CYS48 4.3 0.0 1.0
CA A:CYS46 4.3 0.0 1.0
C A:CYS52 4.3 0.0 1.0
N A:GLU51 4.3 0.0 1.0
CB A:LYS50 4.4 0.0 1.0
C A:LYS47 4.4 0.0 1.0
C A:CYS46 4.5 0.0 1.0
SG A:CYS66 4.5 0.0 1.0
CA A:LYS50 4.5 0.0 1.0
HG2 A:LYS50 4.6 0.0 1.0
HB3 A:CYS52 4.6 0.0 1.0
HB2 A:CYS52 4.6 0.0 1.0
CB A:CYS66 4.6 0.0 1.0
C A:LYS50 4.7 0.0 1.0
CA A:LYS47 4.7 0.0 1.0
HB3 A:CYS46 4.7 0.0 1.0
CA A:GLY49 4.7 0.0 1.0
C A:GLY49 4.8 0.0 1.0
HA A:CYS48 4.8 0.0 1.0
HB2 A:CYS66 4.8 0.0 1.0
HB2 A:LYS47 4.8 0.0 1.0
C A:GLU51 4.8 0.0 1.0
HA A:GLU51 5.0 0.0 1.0
CA A:GLU51 5.0 0.0 1.0

Reference:

A.Beil, S.Jurt, T.Schaefer, R.Walser, S.Atrian, M.Capedvila, P.Guentert, R.Dallinger, O.Zerbe. The Solution Structures of the Cd- and Zn-Loaded Metallothionein Species From Helix Pomatia To Be Published.
Page generated: Sat Dec 12 08:29:06 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy