Cadmium in PDB 6qk6: Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia

The binding sites of Cadmium atom in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia (pdb code 6qk6). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 6 binding sites of Cadmium where determined in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia, PDB code: 6qk6:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6;

Cadmium binding site 1 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd101 b:0.0 occ:1.00 SG A:CYS14 2.6 0.0 1.0 SG A:CYS31 2.6 0.0 1.0 SG A:CYS10 2.7 0.0 1.0 SG A:CYS27 2.7 0.0 1.0 HB2 A:CYS31 2.9 0.0 1.0 HD2 A:LYS6 3.0 0.0 1.0 HB3 A:CYS27 3.1 0.0 1.0 HB3 A:CYS10 3.2 0.0 1.0 HB3 A:CYS14 3.2 0.0 1.0 HA A:CYS10 3.3 0.0 1.0 CB A:CYS14 3.3 0.0 1.0 HB2 A:CYS14 3.3 0.0 1.0 CB A:CYS31 3.4 0.0 1.0 CB A:CYS10 3.4 0.0 1.0 CB A:CYS27 3.4 0.0 1.0 H A:THR11 3.8 0.0 1.0 CA A:CYS10 3.9 0.0 1.0 HB2 A:CYS27 3.9 0.0 1.0 HB3 A:CYS31 4.0 0.0 1.0 HB3 A:CYS33 4.0 0.0 1.0 CD A:LYS6 4.1 0.0 1.0 CD A:CD102 4.1 0.0 1.0 CD A:CD103 4.1 0.0 1.0 HB3 A:LYS6 4.1 0.0 1.0 HZ2 A:LYS6 4.1 0.0 1.0 SG A:CYS36 4.2 0.0 1.0 HB2 A:CYS33 4.3 0.0 1.0 HA A:CYS31 4.4 0.0 1.0 HB2 A:CYS10 4.4 0.0 1.0 HD3 A:LYS6 4.4 0.0 1.0 H A:GLY7 4.5 0.0 1.0 CA A:CYS31 4.5 0.0 1.0 HE2 A:LYS6 4.7 0.0 1.0 N A:THR11 4.7 0.0 1.0 HE3 A:LYS37 4.7 0.0 1.0 CB A:CYS33 4.7 0.0 1.0 HA A:CYS27 4.7 0.0 1.0 HG3 A:LYS6 4.7 0.0 1.0 CA A:CYS27 4.7 0.0 1.0 CE A:LYS6 4.8 0.0 1.0 CA A:CYS14 4.8 0.0 1.0 CG A:LYS6 4.8 0.0 1.0 H A:CYS33 4.9 0.0 1.0 C A:CYS10 4.9 0.0 1.0 N A:CYS10 4.9 0.0 1.0 NZ A:LYS6 4.9 0.0 1.0 CB A:LYS6 5.0 0.0 1.0

Cadmium binding site 2 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd102 b:0.0 occ:1.00 SG A:CYS14 2.5 0.0 1.0 SG A:CYS19 2.5 0.0 1.0 SG A:CYS36 2.6 0.0 1.0 SG A:CYS33 2.6 0.0 1.0 HB3 A:CYS33 2.6 0.0 1.0 CB A:CYS33 3.1 0.0 1.0 HB2 A:ALA35 3.2 0.0 1.0 HB2 A:CYS14 3.3 0.0 1.0 HZ2 A:LYS6 3.3 0.0 1.0 HA A:CYS14 3.4 0.0 1.0 CB A:CYS14 3.4 0.0 1.0 HB2 A:CYS33 3.4 0.0 1.0 H A:CYS36 3.6 0.0 1.0 HB3 A:CYS36 3.7 0.0 1.0 CB A:CYS36 3.9 0.0 1.0 CA A:CYS14 3.9 0.0 1.0 CD A:CD103 3.9 0.0 1.0 HB2 A:CYS19 4.0 0.0 1.0 HZ1 A:LYS6 4.0 0.0 1.0 CB A:CYS19 4.0 0.0 1.0 CD A:CD101 4.1 0.0 1.0 NZ A:LYS6 4.1 0.0 1.0 HE2 A:LYS6 4.1 0.0 1.0 N A:CYS36 4.2 0.0 1.0 CB A:ALA35 4.3 0.0 1.0 HB2 A:CYS21 4.4 0.0 1.0 O A:CYS14 4.4 0.0 1.0 HB3 A:CYS14 4.4 0.0 1.0 SG A:CYS31 4.5 0.0 1.0 CA A:CYS33 4.5 0.0 1.0 O A:CYS33 4.5 0.0 1.0 SG A:CYS21 4.5 0.0 1.0 HD2 A:LYS6 4.5 0.0 1.0 HB3 A:CYS19 4.5 0.0 1.0 H A:ALA35 4.6 0.0 1.0 C A:CYS14 4.6 0.0 1.0 CE A:LYS6 4.6 0.0 1.0 HB1 A:ALA35 4.6 0.0 1.0 HB2 A:CYS36 4.7 0.0 1.0 CA A:CYS36 4.7 0.0 1.0 C A:CYS33 4.7 0.0 1.0 HB3 A:ALA35 4.8 0.0 1.0 C A:ALA35 4.9 0.0 1.0 HZ3 A:LYS6 4.9 0.0 1.0 HA A:CYS19 5.0 0.0 1.0 CA A:ALA35 5.0 0.0 1.0

Cadmium binding site 3 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd103 b:0.0 occ:1.00 SG A:CYS36 2.5 0.0 1.0 SG A:CYS27 2.7 0.0 1.0 HB2 A:CYS36 2.7 0.0 1.0 SG A:CYS21 2.7 0.0 1.0 SG A:CYS25 2.7 0.0 1.0 HB2 A:CYS14 2.7 0.0 1.0 HB3 A:CYS21 2.9 0.0 1.0 CB A:CYS36 2.9 0.0 1.0 HB3 A:CYS36 3.0 0.0 1.0 CB A:CYS21 3.2 0.0 1.0 HB2 A:CYS21 3.3 0.0 1.0 HG1 A:THR11 3.4 0.0 1.0 HB2 A:CYS27 3.4 0.0 1.0 HA A:CYS25 3.6 0.0 1.0 CB A:CYS27 3.7 0.0 1.0 H A:CYS27 3.7 0.0 1.0 CB A:CYS14 3.8 0.0 1.0 H A:GLN26 3.8 0.0 1.0 CB A:CYS25 3.9 0.0 1.0 HB2 A:CYS25 3.9 0.0 1.0 CD A:CD102 3.9 0.0 1.0 CD A:CD101 4.1 0.0 1.0 OG1 A:THR11 4.2 0.0 1.0 CA A:CYS25 4.2 0.0 1.0 HB3 A:CYS14 4.3 0.0 1.0 HG22 A:THR11 4.3 0.0 1.0 SG A:CYS14 4.4 0.0 1.0 HB3 A:CYS27 4.4 0.0 1.0 N A:CYS27 4.4 0.0 1.0 CA A:CYS36 4.5 0.0 1.0 H A:THR11 4.5 0.0 1.0 SG A:CYS19 4.6 0.0 1.0 N A:GLN26 4.6 0.0 1.0 HA A:CYS14 4.6 0.0 1.0 HG21 A:THR11 4.6 0.0 1.0 CA A:CYS21 4.6 0.0 1.0 CA A:CYS27 4.7 0.0 1.0 CA A:CYS14 4.7 0.0 1.0 H A:CYS14 4.7 0.0 1.0 HB3 A:CYS25 4.8 0.0 1.0 CG2 A:THR11 4.9 0.0 1.0 HA A:CYS21 4.9 0.0 1.0 C A:CYS25 5.0 0.0 1.0 SG A:CYS31 5.0 0.0 1.0 HA A:CYS36 5.0 0.0 1.0 N A:CYS14 5.0 0.0 1.0

Cadmium binding site 4 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd104 b:0.0 occ:1.00 SG A:CYS39 2.5 0.0 1.0 SG A:CYS58 2.6 0.0 1.0 HZ2 A:LYS67 2.6 0.0 1.0 SG A:CYS66 2.7 0.0 1.0 SG A:CYS52 2.7 0.0 1.0 HZ1 A:LYS67 3.0 0.0 1.0 NZ A:LYS67 3.1 0.0 1.0 HZ3 A:LYS67 3.2 0.0 1.0 HB2 A:CYS39 3.4 0.0 1.0 HB2 A:CYS52 3.5 0.0 1.0 HB2 A:CYS58 3.5 0.0 1.0 CB A:CYS39 3.6 0.0 1.0 CB A:CYS58 3.7 0.0 1.0 CD A:CD105 3.7 0.0 1.0 CB A:CYS52 3.7 0.0 1.0 HB2 A:CYS66 3.7 0.0 1.0 HB2 A:CYS41 3.8 0.0 1.0 SG A:CYS60 3.8 0.0 1.0 CB A:CYS66 3.9 0.0 1.0 HA A:CYS58 3.9 0.0 1.0 HA A:CYS39 4.0 0.0 1.0 HB2 A:CYS60 4.0 0.0 1.0 CD A:CD106 4.0 0.0 1.0 H A:CYS41 4.1 0.0 1.0 H A:ASN40 4.1 0.0 1.0 HB3 A:CYS66 4.2 0.0 1.0 HB3 A:CYS52 4.3 0.0 1.0 SG A:CYS41 4.3 0.0 1.0 H A:GLY54 4.4 0.0 1.0 CA A:CYS58 4.4 0.0 1.0 CA A:CYS39 4.4 0.0 1.0 HB3 A:CYS39 4.5 0.0 1.0 CB A:CYS60 4.6 0.0 1.0 CE A:LYS67 4.6 0.0 1.0 HB3 A:CYS58 4.6 0.0 1.0 CB A:CYS41 4.6 0.0 1.0 H A:CYS60 4.6 0.0 1.0 HE3 A:LYS67 4.9 0.0 1.0 HB2 A:LYS50 4.9 0.0 1.0 SG A:CYS48 4.9 0.0 1.0 N A:ASN40 4.9 0.0 1.0 CA A:CYS52 5.0 0.0 1.0 HE2 A:LYS67 5.0 0.0 1.0

Cadmium binding site 5 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd105 b:0.0 occ:1.00 SG A:CYS66 2.5 0.0 1.0 SG A:CYS64 2.5 0.0 1.0 SG A:CYS60 2.7 0.0 1.0 SG A:CYS48 2.7 0.0 1.0 HG3 A:LYS50 3.0 0.0 1.0 H A:CYS66 3.2 0.0 1.0 HB3 A:CYS64 3.3 0.0 1.0 HB2 A:CYS48 3.3 0.0 1.0 HG2 A:LYS50 3.4 0.0 1.0 HZ3 A:LYS67 3.4 0.0 1.0 HB3 A:CYS48 3.4 0.0 1.0 CB A:CYS48 3.4 0.0 1.0 HB3 A:CYS60 3.5 0.0 1.0 HB2 A:LYS50 3.5 0.0 1.0 HB3 A:CYS66 3.6 0.0 1.0 CB A:CYS64 3.6 0.0 1.0 CG A:LYS50 3.6 0.0 1.0 CB A:CYS60 3.6 0.0 1.0 CB A:CYS66 3.7 0.0 1.0 CD A:CD104 3.7 0.0 1.0 HB2 A:CYS60 3.8 0.0 1.0 HB2 A:CYS64 4.0 0.0 1.0 CD A:CD106 4.0 0.0 1.0 N A:CYS66 4.1 0.0 1.0 CB A:LYS50 4.1 0.0 1.0 SG A:CYS52 4.1 0.0 1.0 HZ2 A:LYS67 4.2 0.0 1.0 NZ A:LYS67 4.2 0.0 1.0 H A:SER65 4.3 0.0 1.0 H A:LYS50 4.4 0.0 1.0 HG2 A:LYS67 4.4 0.0 1.0 HB2 A:CYS66 4.5 0.0 1.0 CA A:CYS66 4.5 0.0 1.0 N A:SER65 4.7 0.0 1.0 HB2 A:SER65 4.7 0.0 1.0 HZ1 A:LYS67 4.7 0.0 1.0 HB3 A:LYS50 4.7 0.0 1.0 CA A:CYS64 4.9 0.0 1.0 CA A:CYS48 4.9 0.0 1.0 H A:CYS60 4.9 0.0 1.0 CD A:LYS50 4.9 0.0 1.0 SG A:CYS58 4.9 0.0 1.0 HD2 A:LYS50 5.0 0.0 1.0 C A:CYS64 5.0 0.0 1.0

Cadmium binding site 6 out of 6 in the Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Solution Structure of the Cd-Loaded Form of A Metallothionein From Helix Pomatia within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd106 b:0.0 occ:1.00 SG A:CYS48 2.5 0.0 1.0 SG A:CYS46 2.5 0.0 1.0 SG A:CYS52 2.5 0.0 1.0 H A:CYS48 2.5 0.0 1.0 SG A:CYS41 2.6 0.0 1.0 H A:GLY49 2.8 0.0 1.0 H A:LYS50 3.0 0.0 1.0 H A:CYS52 3.0 0.0 1.0 H A:LYS47 3.1 0.0 1.0 HB3 A:CYS48 3.1 0.0 1.0 CB A:CYS48 3.3 0.0 1.0 N A:CYS48 3.4 0.0 1.0 HB2 A:LYS50 3.5 0.0 1.0 O A:CYS52 3.6 0.0 1.0 CB A:CYS41 3.7 0.0 1.0 HB2 A:CYS41 3.7 0.0 1.0 N A:GLY49 3.7 0.0 1.0 HB3 A:CYS41 3.8 0.0 1.0 CA A:CYS48 3.8 0.0 1.0 N A:CYS52 3.8 0.0 1.0 N A:LYS47 3.8 0.0 1.0 H A:GLU51 3.9 0.0 1.0 HA A:CYS46 3.9 0.0 1.0 N A:LYS50 3.9 0.0 1.0 CB A:CYS46 3.9 0.0 1.0 HB3 A:CYS66 4.0 0.0 1.0 CB A:CYS52 4.0 0.0 1.0 CD A:CD105 4.0 0.0 1.0 CD A:CD104 4.0 0.0 1.0 HB2 A:CYS46 4.2 0.0 1.0 C A:CYS48 4.2 0.0 1.0 CA A:CYS52 4.3 0.0 1.0 HB2 A:CYS48 4.3 0.0 1.0 CA A:CYS46 4.3 0.0 1.0 C A:CYS52 4.3 0.0 1.0 N A:GLU51 4.3 0.0 1.0 CB A:LYS50 4.4 0.0 1.0 C A:LYS47 4.4 0.0 1.0 C A:CYS46 4.5 0.0 1.0 SG A:CYS66 4.5 0.0 1.0 CA A:LYS50 4.5 0.0 1.0 HG2 A:LYS50 4.6 0.0 1.0 HB3 A:CYS52 4.6 0.0 1.0 HB2 A:CYS52 4.6 0.0 1.0 CB A:CYS66 4.6 0.0 1.0 C A:LYS50 4.7 0.0 1.0 CA A:LYS47 4.7 0.0 1.0 HB3 A:CYS46 4.7 0.0 1.0 CA A:GLY49 4.7 0.0 1.0 C A:GLY49 4.8 0.0 1.0 HA A:CYS48 4.8 0.0 1.0 HB2 A:CYS66 4.8 0.0 1.0 HB2 A:LYS47 4.8 0.0 1.0 C A:GLU51 4.8 0.0 1.0 HA A:GLU51 5.0 0.0 1.0 CA A:GLU51 5.0 0.0 1.0

A.Beil, S.Jurt, T.Schaefer, R.Walser, S.Atrian, M.Capedvila, P.Guentert, R.Dallinger, O.Zerbe. The Solution Structures of the Cd- and Zn-Loaded Metallothionein Species From Helix Pomatia To Be Published.