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Cadmium in PDB 6uac: Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam

Enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam

All present enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam, PDB code: 6uac was solved by Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.40 / 1.60
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.339, 104.339, 98.975, 90.00, 90.00, 120.00
R / Rfree (%) 15.4 / 17.3

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam (pdb code 6uac). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam, PDB code: 6uac:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 6uac

Go back to Cadmium Binding Sites List in 6uac
Cadmium binding site 1 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd402

b:19.3
occ:0.85
 NE2 A:HIS246 2.3 19.9 1.0
NE2 A:HIS110 2.4 20.5 1.0
OD2 A:ASP109 2.4 22.5 1.0
O A:HOH501 2.4 25.2 1.0
O3 A:MX1404 2.5 24.3 1.0
N1 A:MX1404 2.5 24.2 1.0
CG A:ASP109 3.2 21.8 1.0
C7 A:MX1404 3.2 24.5 1.0
CD2 A:HIS246 3.2 20.0 1.0
C4 A:MX1404 3.2 25.0 1.0
CE1 A:HIS110 3.3 20.0 1.0
OD1 A:ASP109 3.3 18.9 1.0
CD2 A:HIS110 3.3 18.0 1.0
CE1 A:HIS246 3.4 20.3 1.0
C3 A:MX1404 3.4 24.5 1.0
CD A:CD403 3.7 18.8 0.9
O5 A:MX1404 4.1 25.4 1.0
C2 A:MX1404 4.3 24.8 1.0
O4 A:MX1404 4.4 23.6 1.0
O32 A:MX1404 4.4 23.2 1.0
ND1 A:HIS110 4.4 15.4 1.0
CG A:HIS246 4.4 20.7 1.0
CG A:HIS110 4.4 13.9 1.0
NE2 A:HIS105 4.4 16.7 1.0
ND1 A:HIS246 4.4 20.4 1.0
O2 A:MX1404 4.5 28.8 1.0
CE1 A:HIS105 4.5 16.2 1.0
C5 A:MX1404 4.5 27.6 1.0
CB A:ASP109 4.5 19.2 1.0
C1 A:MX1404 4.7 25.2 1.0
OG A:SER206 4.8 22.0 1.0
CH2 A:TRP38 4.9 22.7 1.0
CZ3 A:TRP38 4.9 21.1 1.0

Cadmium binding site 2 out of 2 in 6uac

Go back to Cadmium Binding Sites List in 6uac
Cadmium binding site 2 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd403

b:18.8
occ:0.89
 NE2 A:HIS181 2.3 18.8 1.0
O A:HOH501 2.3 25.2 1.0
ND1 A:HIS107 2.3 18.7 1.0
NE2 A:HIS105 2.4 16.7 1.0
O32 A:MX1404 2.5 23.2 1.0
CE1 A:HIS107 3.2 18.9 1.0
CD2 A:HIS181 3.2 18.1 1.0
CE1 A:HIS181 3.3 20.8 1.0
CG A:HIS107 3.3 14.1 1.0
CD2 A:HIS105 3.3 15.2 1.0
CE1 A:HIS105 3.3 16.2 1.0
O3 A:MX1404 3.4 24.3 1.0
C1 A:MX1404 3.6 25.2 1.0
CB A:HIS107 3.6 15.7 1.0
CD A:CD402 3.7 19.3 0.8
N1 A:MX1404 3.7 24.2 1.0
O5 A:MX1404 3.9 25.4 1.0
C7 A:MX1404 4.1 24.5 1.0
C9 A:MX1404 4.2 25.5 1.0
C2 A:MX1404 4.3 24.8 1.0
OD1 A:ASP109 4.3 18.9 1.0
C4 A:MX1404 4.3 25.0 1.0
NE2 A:HIS107 4.4 16.4 1.0
CG A:HIS181 4.4 14.2 1.0
ND1 A:HIS181 4.4 19.8 1.0
CD2 A:HIS110 4.4 18.0 1.0
ND1 A:HIS105 4.4 19.0 1.0
CD2 A:HIS107 4.4 17.5 1.0
CG A:HIS105 4.5 14.5 1.0
NE2 A:HIS110 4.6 20.5 1.0
C3 A:MX1404 4.6 24.5 1.0
O31 A:MX1404 4.6 25.3 0.7

Reference:

Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Cadmium and Hydrolyzed Moxolactam To Be Published.
Page generated: Fri Jul 19 19:43:06 2024

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