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Cadmium in PDB 6v36: K2P2.1(Trek-1)I110D Apo Channel Structure

Protein crystallography data

The structure of K2P2.1(Trek-1)I110D Apo Channel Structure, PDB code: 6v36 was solved by L.Pope, M.Lolicato, D.L.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.98 / 3.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.192, 120.400, 128.355, 90.00, 90.00, 90.00
R / Rfree (%) 28.6 / 31.8

Other elements in 6v36:

The structure of K2P2.1(Trek-1)I110D Apo Channel Structure also contains other interesting chemical elements:

Potassium (K) 6 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the K2P2.1(Trek-1)I110D Apo Channel Structure (pdb code 6v36). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the K2P2.1(Trek-1)I110D Apo Channel Structure, PDB code: 6v36:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 6v36

Go back to Cadmium Binding Sites List in 6v36
Cadmium binding site 1 out of 3 in the K2P2.1(Trek-1)I110D Apo Channel Structure


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of K2P2.1(Trek-1)I110D Apo Channel Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd401

b:0.1
occ:1.00
OE1 A:GLU309 4.1 0.1 1.0
CD A:GLU309 4.5 0.1 1.0
CG A:GLU309 4.5 0.9 1.0
CB A:GLU309 4.7 1.0 1.0

Cadmium binding site 2 out of 3 in 6v36

Go back to Cadmium Binding Sites List in 6v36
Cadmium binding site 2 out of 3 in the K2P2.1(Trek-1)I110D Apo Channel Structure


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of K2P2.1(Trek-1)I110D Apo Channel Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd401

b:0.5
occ:1.00
OE1 B:GLU309 2.7 0.4 1.0
OE2 B:GLU309 3.0 0.9 1.0
CE1 B:HIS313 3.0 0.5 1.0
CD B:GLU309 3.1 0.3 1.0
NE2 B:HIS313 3.8 0.2 1.0
ND1 B:HIS313 4.0 1.0 1.0
CG B:GLU309 4.5 0.6 1.0
CA B:GLU309 4.8 0.0 1.0
CB B:GLU309 5.0 0.8 1.0

Cadmium binding site 3 out of 3 in 6v36

Go back to Cadmium Binding Sites List in 6v36
Cadmium binding site 3 out of 3 in the K2P2.1(Trek-1)I110D Apo Channel Structure


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of K2P2.1(Trek-1)I110D Apo Channel Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd402

b:0.6
occ:0.50
CE1 B:HIS126 3.7 0.6 1.0
NE2 B:HIS126 4.1 0.0 1.0
ND1 B:HIS126 4.4 0.6 1.0
CD2 B:HIS126 4.9 0.2 1.0

Reference:

L.Pope, M.Lolicato, D.L.Minor Jr.. Polynuclear Ruthenium Amines Inhibit K2PCHANNELS Via A "Finger in the Dam" Mechanism. Cell Chem Biol 2020.
ISSN: ESSN 2451-9456
PubMed: 32059793
DOI: 10.1016/J.CHEMBIOL.2020.01.011
Page generated: Sat Dec 12 08:29:18 2020

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