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Cadmium in PDB 6v70: Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site

Enzymatic activity of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site

All present enzymatic activity of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site, PDB code: 6v70 was solved by N.Maltseva, Y.Kim, S.Clancy, M.Endres, R.Mulligan, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.47 / 1.95
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 80.352, 80.352, 245.373, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 18.3

Other elements in 6v70:

The structure of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site (pdb code 6v70). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site, PDB code: 6v70:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 6v70

Go back to Cadmium Binding Sites List in 6v70
Cadmium binding site 1 out of 3 in the Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd305

b:33.2
occ:0.97
NE2 A:HIS241 2.4 30.5 1.0
O2 A:EDO303 2.5 41.4 1.0
SG A:CYS199 2.5 33.2 1.0
O1 A:EDO303 2.6 65.6 1.0
CL A:CL301 2.7 38.6 1.0
CL A:CL304 2.7 35.5 1.0
C2 A:EDO303 3.0 55.0 1.0
C1 A:EDO303 3.2 69.0 1.0
CD2 A:HIS241 3.3 27.9 1.0
CE1 A:HIS241 3.3 31.5 1.0
CB A:CYS199 3.7 28.5 1.0
CD A:CD306 3.8 36.4 1.0
O A:HOH401 4.1 22.2 1.0
CE1 A:HIS180 4.3 31.6 1.0
ND1 A:HIS241 4.4 28.6 1.0
CG A:HIS241 4.5 28.9 1.0
NE2 A:HIS180 4.5 29.8 1.0
O A:HOH429 4.6 29.8 1.0
CA A:CYS199 4.6 30.3 1.0
O A:HOH442 4.7 47.7 1.0
CB A:SER240 5.0 30.7 1.0

Cadmium binding site 2 out of 3 in 6v70

Go back to Cadmium Binding Sites List in 6v70
Cadmium binding site 2 out of 3 in the Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd306

b:36.4
occ:1.00
ND1 A:HIS118 2.4 34.7 1.0
NE2 A:HIS116 2.4 35.8 1.0
NE2 A:HIS180 2.4 29.8 1.0
CL A:CL301 2.5 38.6 1.0
O A:HOH401 2.6 22.2 1.0
SG A:CYS199 3.2 33.2 1.0
CE1 A:HIS116 3.3 34.3 1.0
CE1 A:HIS118 3.3 45.1 1.0
CD2 A:HIS180 3.3 28.2 1.0
CE1 A:HIS180 3.4 31.6 1.0
CG A:HIS118 3.4 34.4 1.0
CD2 A:HIS116 3.5 29.8 1.0
CB A:HIS118 3.7 34.1 1.0
O2 A:EDO303 3.7 41.4 1.0
CD A:CD305 3.8 33.2 1.0
CB A:CYS199 3.9 28.5 1.0
ND1 A:HIS116 4.4 33.7 1.0
NE2 A:HIS118 4.4 43.5 1.0
ND1 A:HIS180 4.4 28.6 1.0
CG A:HIS180 4.5 32.5 1.0
CD2 A:HIS118 4.5 37.9 1.0
CG A:HIS116 4.6 30.8 1.0
ND2 A:ASN211 4.8 60.4 1.0
C2 A:EDO303 4.8 55.0 1.0
O A:HOH476 4.8 46.1 1.0
CG A:LYS121 5.0 44.5 1.0

Cadmium binding site 3 out of 3 in 6v70

Go back to Cadmium Binding Sites List in 6v70
Cadmium binding site 3 out of 3 in the Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica with Cadmium in the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd307

b:31.4
occ:0.90
O A:HOH488 2.4 30.4 1.0
OD1 A:ASP126 2.5 34.7 1.0
OD2 A:ASP126 2.6 35.7 1.0
SE A:MSE130 2.8 41.2 0.6
CL A:CL302 2.9 64.7 0.6
CG A:ASP126 2.9 37.9 1.0
CG A:MSE130 3.7 35.4 1.0
CE A:MSE130 4.2 50.0 1.0
O A:HOH506 4.3 39.4 0.3
CB A:ASP126 4.4 34.6 1.0
O A:HOH422 4.5 46.0 1.0
CD2 A:HIS129 4.6 35.1 1.0
O A:ASP126 4.8 32.9 1.0

Reference:

N.Maltseva, Y.Kim, S.Clancy, M.Endres, R.Mulligan, A.Joachimiak. Crystal Structure of Metallo Beta Lactamase From Hirschia Baltica. To Be Published.
Page generated: Sat Dec 12 08:29:22 2020

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