Cadmium in PDB 6y68: Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation

The structure of Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation, PDB code: 6y68 was solved by A.Serris, F.A.Rey, P.Guardado-Calvo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.83 / 2.40
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	90.348, 90.348, 506.380, 90.00, 90.00, 120.00
R / Rfree (%)	19.6 / 23.6

The binding sites of Cadmium atom in the Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation (pdb code 6y68). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation, PDB code: 6y68:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in the Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1205 b:58.5 occ:1.00 OD1 A:ASP933 2.6 68.8 1.0 CE1 A:HIS935 2.6 63.9 1.0 OD2 A:ASP933 2.6 59.0 1.0 CG A:ASP933 3.0 48.5 1.0 NE2 A:HIS935 3.1 53.8 1.0 ND1 A:HIS935 3.8 60.0 1.0 CD2 A:HIS935 4.4 64.9 1.0 CB A:ASP933 4.5 41.2 1.0 CG A:HIS935 4.8 59.2 1.0 O A:ASP933 4.9 46.0 1.0

Cadmium binding site 2 out of 4 in the Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1206 b:99.3 occ:1.00 O A:THR814 2.6 90.5 1.0 C A:THR814 3.7 65.6 1.0 CB A:THR814 4.5 73.8 1.0 N A:GLU815 4.5 55.6 1.0 CA A:THR814 4.5 64.4 1.0 CA A:GLU815 4.6 55.8 1.0 OE1 A:GLU815 4.6 0.7 1.0 OG1 A:THR814 4.9 77.5 1.0 N A:GLN816 5.0 57.0 1.0

Cadmium binding site 3 out of 4 in the Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1207 b:52.9 occ:1.00 O A:HOH1375 2.5 31.2 1.0 O A:HOH1371 2.6 31.2 1.0 OD2 A:ASP952 2.6 63.3 1.0 OG1 A:THR839 2.6 62.3 1.0 SD A:MET836 2.9 51.1 1.0 CG A:ASP952 3.4 47.1 1.0 CB A:THR839 3.4 53.1 1.0 CB A:ASP952 3.4 40.9 1.0 CE A:MET836 3.8 37.1 1.0 CB A:ALA823 3.9 53.3 1.0 CG A:MET836 4.1 55.5 1.0 CA A:ALA823 4.1 38.0 1.0 CB A:MET836 4.1 43.8 1.0 NE A:ARG806 4.3 36.8 1.0 OE1 A:GLN713 4.3 54.1 1.0 CG2 A:THR839 4.3 39.4 1.0 CA A:THR839 4.5 66.2 1.0 N A:THR839 4.5 66.1 1.0 OD1 A:ASP952 4.6 55.9 1.0 CD A:ARG806 4.9 37.0 1.0 CG A:ARG806 4.9 41.3 1.0 CA A:ASP952 4.9 44.0 1.0 N A:ALA823 5.0 45.0 1.0

Cadmium binding site 4 out of 4 in the Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Structure of Maporal Virus Envelope Glycoprotein Gc in Postfusion Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1208 b:0.5 occ:1.00 OD2 A:ASP822 3.1 83.7 1.0 O A:HOH1323 3.6 84.7 1.0 CG A:ASP822 3.9 73.2 1.0 OD1 A:ASP822 4.1 80.0 1.0 CD A:LYS803 4.6 83.7 1.0

A.Serris, R.Stass, E.A.Bignon, N.A.Muena, J.C.Manuguerra, R.K.Jangra, S.Li, K.Chandran, N.D.Tischler, J.T.Huiskonen, F.A.Rey, P.Guardado-Calvo. The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism. Cell V. 183 442 2020.
ISSN: ISSN 1097-4172
PubMed: 32937107
DOI: 10.1016/J.CELL.2020.08.023