Atomistry » Cadmium » PDB 6w8a-7kgq » 7a1t
Atomistry »
  Cadmium »
    PDB 6w8a-7kgq »
      7a1t »

Cadmium in PDB 7a1t: A Collapsed Hexameric State of A De Novo Coiled-Coil Assembly: Cc- TYPE2-(Gglaid)4-W19BRPHE.

Protein crystallography data

The structure of A Collapsed Hexameric State of A De Novo Coiled-Coil Assembly: Cc- TYPE2-(Gglaid)4-W19BRPHE., PDB code: 7a1t was solved by G.G.Rhys, R.L.Brady, D.N.Woolfson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.22 / 1.42
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 50.646, 129.687, 59.141, 90, 90, 90
R / Rfree (%) 14.9 / 19.3

Other elements in 7a1t:

The structure of A Collapsed Hexameric State of A De Novo Coiled-Coil Assembly: Cc- TYPE2-(Gglaid)4-W19BRPHE. also contains other interesting chemical elements:

Bromine (Br) 7 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the A Collapsed Hexameric State of A De Novo Coiled-Coil Assembly: Cc- TYPE2-(Gglaid)4-W19BRPHE. (pdb code 7a1t). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the A Collapsed Hexameric State of A De Novo Coiled-Coil Assembly: Cc- TYPE2-(Gglaid)4-W19BRPHE., PDB code: 7a1t:

Cadmium binding site 1 out of 1 in 7a1t

Go back to Cadmium Binding Sites List in 7a1t
Cadmium binding site 1 out of 1 in the A Collapsed Hexameric State of A De Novo Coiled-Coil Assembly: Cc- TYPE2-(Gglaid)4-W19BRPHE.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of A Collapsed Hexameric State of A De Novo Coiled-Coil Assembly: Cc- TYPE2-(Gglaid)4-W19BRPHE. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd101

b:18.0
occ:0.50
NE2 B:GLN26 1.6 13.0 0.5
CD B:GLN26 2.1 20.1 0.5
OE1 B:GLN26 2.1 21.1 0.5
OE1 B:GLN26 2.3 21.7 0.5
OE1 B:GLU23 2.3 29.7 0.5
OE2 B:GLU23 2.5 9.8 0.5
OE1 B:GLU23 3.0 19.5 0.5
CD B:GLU23 3.0 11.7 0.5
CD B:GLU23 3.2 28.9 0.5
CD B:GLN26 3.2 21.2 0.5
CG B:GLN26 3.5 19.1 0.5
OE2 B:GLU23 3.6 34.5 0.5
NE2 B:GLN26 3.6 21.1 0.5
O B:HOH203 3.9 47.0 1.0
CB B:GLN26 4.3 19.3 0.5
CG B:GLU23 4.5 25.4 0.5
CG B:GLU23 4.5 15.8 0.5
CB B:GLN26 4.5 20.9 0.5
CG B:GLN26 4.5 21.8 0.5
NZ A:LYS29 4.7 49.5 1.0
CA B:GLU23 5.0 16.8 0.5
CA B:GLU23 5.0 19.6 0.5

Reference:

W.M.Dawson, F.J.O.Martin, G.G.Rhys, K.L.Shelley, R.L.Brady, D.N.Woolfson. Coiled Coils 9-to-5: Rational De Novo Design of Alpha-Helical Barrels with Tunable Oligomeric States Chem Sci 2021.
ISSN: ESSN 2041-6539
DOI: 10.1039/D1SC00460C
Page generated: Sat Jul 10 11:51:45 2021

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy