Cadmium in PDB 7div: Structure of PFGRX1 in the Intermediate State with Cadmium

All present enzymatic activity of Structure of PFGRX1 in the Intermediate State with Cadmium:
1.8.4.2;

The structure of Structure of PFGRX1 in the Intermediate State with Cadmium, PDB code: 7div was solved by Y.Manickam, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.10 / 1.64
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	48.198, 48.198, 82.721, 90, 90, 120
R / Rfree (%)	15.3 / 17.6

The binding sites of Cadmium atom in the Structure of PFGRX1 in the Intermediate State with Cadmium (pdb code 7div). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Structure of PFGRX1 in the Intermediate State with Cadmium, PDB code: 7div:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Structure of PFGRX1 in the Intermediate State with Cadmium


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of PFGRX1 in the Intermediate State with Cadmium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:29.5 occ:0.31 SG A:CYS29 1.8 42.3 1.0 O A:VAL75 2.4 20.7 1.0 O A:HOH370 2.6 24.8 1.0 O A:HOH396 2.6 23.5 0.8 SG A:CYS32 3.0 19.0 1.0 C A:VAL75 3.1 17.6 1.0 O A:HOH393 3.3 18.0 0.7 CD A:PRO76 3.4 16.4 1.0 N A:PRO76 3.5 15.3 1.0 CB A:CYS29 3.6 34.2 1.0 CG2 A:VAL75 3.7 20.8 1.0 CD A:CD204 3.9 85.7 0.7 CA A:VAL75 4.2 17.5 1.0 N A:CYS32 4.2 18.7 1.0 CB A:VAL75 4.3 19.9 1.0 CB A:CYS32 4.4 18.4 1.0 CD A:LYS26 4.5 32.0 1.0 CG A:LYS26 4.5 23.7 1.0 O A:HOH378 4.6 24.3 1.0 CA A:CYS29 4.6 22.3 1.0 N A:VAL75 4.7 18.4 1.0 CB A:TYR31 4.7 16.8 1.0 CA A:PRO76 4.7 15.6 1.0 CA A:CYS32 4.8 15.2 1.0 CG A:PRO76 4.8 15.8 1.0 C A:TYR31 4.9 16.9 1.0 C A:CYS29 4.9 20.2 1.0 N A:TYR31 5.0 19.8 1.0

Cadmium binding site 2 out of 2 in the Structure of PFGRX1 in the Intermediate State with Cadmium


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of PFGRX1 in the Intermediate State with Cadmium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd204 b:85.7 occ:0.66 O A:HOH393 2.4 18.0 0.7 O A:HOH401 2.5 50.6 0.8 O A:HOH427 3.1 40.1 1.0 O A:HOH396 3.1 23.5 0.8 SG A:CYS29 3.7 42.3 1.0 O A:HOH370 3.9 24.8 1.0 CD A:CD203 3.9 29.5 0.3 CD A:PRO30 4.1 21.5 1.0 CA A:CYS29 4.4 22.3 1.0 CB A:CYS29 4.4 34.2 1.0 N A:PRO30 4.8 17.3 1.0 C A:CYS29 4.9 20.2 1.0

Y.Manickam, A.Sharma. Interaction of Metals with PFGRX1 To Be Published.