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Cadmium in PDB 7kgo: Crystal Structure of Hla-A*0201IN Complex with Sars-Cov-2 N351-359

Protein crystallography data

The structure of Crystal Structure of Hla-A*0201IN Complex with Sars-Cov-2 N351-359, PDB code: 7kgo was solved by C.Szeto, D.S.M.Chatzileontiadou, A.Riboldi-Tunnicliffe, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.51 / 2.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.794, 78.254, 111.511, 90, 90, 90
R / Rfree (%) 18.3 / 22.9

Other elements in 7kgo:

The structure of Crystal Structure of Hla-A*0201IN Complex with Sars-Cov-2 N351-359 also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms
Nickel (Ni) 3 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Hla-A*0201IN Complex with Sars-Cov-2 N351-359 (pdb code 7kgo). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Hla-A*0201IN Complex with Sars-Cov-2 N351-359, PDB code: 7kgo:

Cadmium binding site 1 out of 1 in 7kgo

Go back to Cadmium Binding Sites List in 7kgo
Cadmium binding site 1 out of 1 in the Crystal Structure of Hla-A*0201IN Complex with Sars-Cov-2 N351-359


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Hla-A*0201IN Complex with Sars-Cov-2 N351-359 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd305

b:40.1
occ:1.00
ND1 A:HIS151 2.6 41.4 1.0
OE2 A:GLU154 2.7 43.8 1.0
CE1 A:HIS151 3.3 38.1 1.0
CD A:GLU154 3.5 46.0 1.0
CG A:HIS151 3.5 36.9 1.0
CG A:GLU154 3.7 55.0 1.0
CB A:HIS151 3.9 37.4 1.0
NE2 A:HIS151 4.3 42.0 1.0
OE1 A:GLU154 4.3 71.5 1.0
CD2 A:HIS151 4.4 40.1 1.0
CA A:HIS151 4.8 35.9 1.0

Reference:

C.Szeto, D.S.M.Chatzileontiadou, A.T.Nguyen, H.Sloane, C.A.Lobos, D.Jayasinghe, H.Halim, C.Smith, A.Riboldi-Tunnicliffe, E.J.Grant, S.Gras. The Presentation of Sars-Cov-2 Peptides By the Common Hla-A*02:01 Molecule To Be Published.
Page generated: Sun Jan 24 09:57:39 2021

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