Cadmium in PDB 7qz2: Crystal Structure of Gacs D1 Domain in Complex with BEF3-

All present enzymatic activity of Crystal Structure of Gacs D1 Domain in Complex with BEF3-:
2.7.13.3;

The structure of Crystal Structure of Gacs D1 Domain in Complex with BEF3-, PDB code: 7qz2 was solved by F.Fadel, V.Bassim, T.Botzanowski, V.I.Francis, P.Legrand, S.L.Porter, Y.Bourne, S.Cianferani, F.Vincent, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.62 / 1.87
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	69.695, 74.016, 93.342, 90, 90, 90
R / Rfree (%)	16.8 / 21.3

The structure of Crystal Structure of Gacs D1 Domain in Complex with BEF3- also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Fluorine	(F)	6 atoms

The binding sites of Cadmium atom in the Crystal Structure of Gacs D1 Domain in Complex with BEF3- (pdb code 7qz2). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-, PDB code: 7qz2:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd801 b:33.8 occ:1.00 OE1 A:GLU707 2.4 18.1 1.0 O B:HOH985 2.4 34.4 1.0 O B:HOH955 2.5 18.8 1.0 OD1 B:ASP695 2.5 24.1 1.0 OD2 B:ASP695 2.6 32.2 1.0 OE2 A:GLU707 2.8 24.1 1.0 CG B:ASP695 2.9 23.7 1.0 CD A:GLU707 2.9 24.0 1.0 NH2 A:ARG666 3.8 41.7 1.0 NH1 A:ARG666 4.0 74.8 1.0 OG B:SER696 4.2 15.8 1.0 O A:HOH961 4.4 21.3 1.0 CZ A:ARG666 4.4 74.9 1.0 CB B:ASP695 4.4 17.6 1.0 CG A:GLU707 4.4 21.6 1.0 CB B:SER696 4.5 15.9 1.0 O A:HOH932 4.5 29.8 1.0 O A:HOH907 4.8 32.0 1.0

Cadmium binding site 2 out of 3 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd802 b:20.6 occ:1.00 O B:HOH945 2.2 21.0 1.0 OE1 B:GLU707 2.4 16.6 1.0 OD1 A:ASP695 2.4 18.6 1.0 OD2 A:ASP695 2.5 21.2 1.0 CG A:ASP695 2.8 19.3 1.0 OE2 B:GLU707 3.1 24.9 1.0 CD B:GLU707 3.1 31.0 1.0 NH1 B:ARG666 4.3 44.3 1.0 CB A:ASP695 4.3 20.1 1.0 O B:HOH923 4.3 22.8 1.0 OG A:SER696 4.4 12.1 1.0 O A:HOH946 4.4 24.7 1.0 NH2 B:ARG666 4.5 38.1 1.0 CG B:GLU707 4.6 20.4 1.0 CB A:SER696 4.6 13.4 1.0 O A:HOH917 4.7 34.8 1.0 CZ B:ARG666 4.9 35.3 1.0 C A:ASP695 5.0 14.3 1.0

Cadmium binding site 3 out of 3 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd803 b:18.8 occ:0.80 O A:HOH952 1.9 26.4 1.0 OE2 A:GLU738 2.3 26.6 1.0 OE1 A:GLU738 2.4 20.6 1.0 CD A:GLU738 2.7 26.2 1.0 CG A:GLU738 4.2 17.1 1.0 O A:HOH979 4.2 31.8 1.0 O A:HOH951 4.5 40.5 1.0

F.Fadel, V.Bassim, T.Botzanowski, V.I.Francis, P.Legrand, S.L.Porter, Y.Bourne, S.Cianferani, F.Vincent. Crystal Structure of Gacs D1 Domain in Complex with BEF3- To Be Published.