Cadmium in PDB 7rzx: Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV

The structure of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV, PDB code: 7rzx was solved by S.Aditya, R.Priyadharshine, I.Maham, J.D.Miller, V.Stojanoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.63 / 2.44
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	181.075, 181.075, 181.075, 90, 90, 90
R / Rfree (%)	19 / 22.2

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Cadmium atom in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV (pdb code 7rzx). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 13 binding sites of Cadmium where determined in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV, PDB code: 7rzx:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cadmium binding site 1 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:33.2 occ:0.51 OD1 A:ASP80 2.5 32.6 1.0 OD2 A:ASP80 2.7 29.1 1.0 CG A:ASP80 2.9 34.6 1.0 CD A:CD204 3.0 45.0 0.3 CD A:CD207 4.3 48.5 0.2 CB A:ASP80 4.4 28.1 1.0

Cadmium binding site 2 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:86.0 occ:0.33 OE1 A:GLU130 2.8 65.9 1.0 O A:HOH356 3.1 70.0 1.0 OE2 A:GLU130 3.5 52.6 1.0 CD A:GLU130 3.5 56.5 1.0 CD A:CD203 3.8 108.5 0.1 O A:HOH303 3.9 64.8 1.0 CG A:GLU130 5.0 58.5 1.0

Cadmium binding site 3 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:108.5 occ:0.14 O A:HOH301 3.0 227.7 1.0 OD1 A:ASP127 3.5 76.0 1.0 OE1 A:GLU130 3.8 65.9 1.0 CD A:CD202 3.8 86.0 0.3 CG A:ASP127 4.6 68.6 1.0 OG A:SER131 4.9 78.2 1.0 CD A:GLU130 4.9 56.5 1.0 CB A:GLU130 4.9 58.3 1.0

Cadmium binding site 4 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd204 b:45.0 occ:0.33 CD A:CD201 3.0 33.2 0.5 CD A:CD207 3.3 48.5 0.2 OD2 A:ASP80 4.0 29.1 1.0 OD1 A:ASP80 4.2 32.6 1.0 CG A:ASP80 4.4 34.6 1.0

Cadmium binding site 5 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd205 b:106.2 occ:0.50 OE1 A:GLU56 2.7 76.2 1.0 CD A:GLU56 3.8 75.6 1.0 O A:HOH364 3.8 66.1 1.0 CG A:GLU53 4.1 68.2 1.0 OE2 A:GLU56 4.2 73.3 1.0 OE1 A:GLU53 4.8 74.9 1.0 CD A:GLU53 5.0 76.9 1.0

Cadmium binding site 6 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd206 b:94.1 occ:0.48 CD A:CD209 2.9 85.0 0.4 OE2 A:GLU60 2.9 71.3 1.0 OE1 A:GLU60 2.9 67.6 1.0 CD A:GLU60 3.3 65.1 1.0 O A:HOH362 3.4 73.6 1.0 OE2 A:GLU56 3.5 73.3 1.0 CD A:GLU56 3.6 75.6 1.0 OE1 A:GLU57 3.6 78.5 1.0 OE1 A:GLU56 3.9 76.2 1.0 CG A:GLU56 4.1 61.1 1.0 CD A:GLU57 4.4 78.8 1.0 OE2 A:GLU57 4.8 82.8 1.0 CG A:GLU60 4.8 53.8 1.0 OE1 A:GLU53 4.9 74.9 1.0

Cadmium binding site 7 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd207 b:48.5 occ:0.20 OE1 A:GLN79 2.9 56.5 1.0 N A:ASP80 3.0 30.4 1.0 CG A:ASP80 3.1 34.6 1.0 OD2 A:ASP80 3.2 29.1 1.0 CD A:CD204 3.3 45.0 0.3 OD1 A:ASP80 3.4 32.6 1.0 CA A:GLN79 3.7 35.3 1.0 CB A:ASP80 3.7 28.1 1.0 CB A:GLN79 3.7 38.6 1.0 C A:GLN79 3.8 32.9 1.0 CA A:ASP80 3.9 31.0 1.0 CD A:GLN79 3.9 54.8 1.0 CD A:CD201 4.3 33.2 0.5 CG A:GLN79 4.4 41.0 1.0 O A:HOH359 4.4 38.6 1.0 O A:HOH330 4.5 39.4 1.0

Cadmium binding site 8 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd208 b:101.8 occ:0.57 SG A:CYS126 2.9 45.8 1.0 O A:HOH356 3.3 70.0 1.0 CB A:CYS126 3.6 42.1 1.0 OG A:SER118 4.0 58.9 1.0 CA A:SER118 4.2 41.3 1.0 CA A:PRO123 4.5 42.2 1.0 CB A:SER118 4.5 42.9 1.0 N A:SER118 4.7 46.1 1.0 O A:ASP122 4.8 43.2 1.0 CE1 A:HIS114 4.8 44.5 1.0 CB A:PRO123 4.9 39.5 1.0 N A:PRO123 4.9 41.9 1.0 O A:GLY117 5.0 40.3 1.0

Cadmium binding site 9 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd209 b:85.0 occ:0.39 OE1 A:GLU60 2.9 67.6 1.0 CD A:CD206 2.9 94.1 0.5 OE2 A:GLU57 3.1 82.8 1.0 OE1 A:GLU57 3.1 78.5 1.0 O A:HOH362 3.4 73.6 1.0 CD A:GLU57 3.4 78.8 1.0 CD A:GLU60 3.9 65.1 1.0 OE2 A:GLU60 4.4 71.3 1.0 CG A:GLU57 4.9 58.9 1.0 CB A:GLU60 4.9 45.1 1.0

Cadmium binding site 10 out of 13 in the Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd210 b:67.5 occ:0.41 SG A:CYS48 2.7 42.0 1.0 CD2 A:HIS49 3.2 62.2 1.0 CB A:CYS48 3.5 34.5 1.0 NE2 A:HIS49 3.5 67.0 1.0 NH2 A:ARG52 3.6 60.3 1.0 NE A:ARG52 3.8 60.0 1.0 N A:HIS49 4.0 36.1 1.0 CG A:HIS49 4.1 61.5 1.0 C A:CYS48 4.1 35.7 1.0 CZ A:ARG52 4.2 68.7 1.0 CE1 A:HIS49 4.4 65.9 1.0 O A:CYS48 4.4 34.1 1.0 CA A:CYS48 4.4 31.7 1.0 CA A:HIS49 4.4 35.9 1.0 O A:GLU45 4.5 38.0 1.0 ND1 A:HIS49 4.7 68.7 1.0 CB A:HIS49 4.9 40.8 1.0 CG A:GLU45 5.0 52.5 1.0

S.Aditya, R.Priyadharshine, I.Maham, J.D.Miller, V.Stojanoff. Crystal Structure of Ferritin Grown By Microbatch Method in Presence of Agarose and Electric Field 4.3KV To Be Published.