Cadmium in PDB 7sa2: Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01

The structure of Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01, PDB code: 7sa2 was solved by C.Szeto, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.62 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.533, 79.242, 111.579, 90, 90, 90
R / Rfree (%)	17.4 / 19.6

The structure of Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01 also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Cadmium atom in the Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01 (pdb code 7sa2). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01, PDB code: 7sa2:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd301 b:19.7 occ:1.00 O A:HOH584 2.2 18.7 1.0 ND1 A:HIS191 2.2 20.4 1.0 O A:HIS191 2.4 14.5 1.0 CE1 A:HIS191 3.2 20.6 1.0 C A:HIS191 3.2 15.2 1.0 CG A:HIS191 3.3 18.6 1.0 CB A:HIS191 3.6 15.3 1.0 CA A:HIS191 4.0 13.6 1.0 N A:HIS192 4.0 14.0 1.0 CA A:HIS192 4.3 14.5 1.0 O A:HOH549 4.3 17.7 1.0 NE2 A:HIS191 4.4 20.2 1.0 CD2 A:HIS191 4.4 20.7 1.0 N A:ALA193 4.5 20.9 1.0 N A:HIS191 4.6 12.9 1.0 C A:HIS192 4.9 21.0 1.0

Cadmium binding site 2 out of 2 in the Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd302 b:56.8 occ:1.00 CD2 A:HIS197 2.4 49.8 1.0 O A:HOH448 2.7 37.2 1.0 NE2 A:HIS197 3.3 49.9 1.0 CG A:HIS197 3.5 47.5 1.0 OE2 A:GLU198 3.9 68.1 1.0 CB A:HIS197 4.0 43.0 1.0 CE1 A:HIS197 4.5 49.4 1.0 N A:HIS197 4.6 44.6 1.0 ND1 A:HIS197 4.6 49.8 1.0 CD A:GLU198 4.8 80.2 1.0 CA A:HIS197 4.9 42.0 1.0

C.Szeto, S.Gras. Sars-Cov-2 Spike-Derived Peptide S1060-1068 (Vvflhvtyv) Presented By Hla-A*02:01 To Be Published.