Cadmium in PDB 7u1r: Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01

The structure of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01, PDB code: 7u1r was solved by C.Szeto, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.27 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.59, 78.54, 111.26, 90, 90, 90
R / Rfree (%)	18.3 / 19.6

The structure of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Zinc	(Zn)	1 atom
Sodium	(Na)	1 atom

The binding sites of Cadmium atom in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 (pdb code 7u1r). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01, PDB code: 7u1r:

Cadmium binding site 1 out of 1 in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd401 b:27.9 occ:1.00 OE2 A:GLU154 2.3 29.9 1.0 OE1 A:GLU154 2.3 22.5 1.0 CD2 A:HIS151 2.5 33.9 1.0 CD A:GLU154 2.7 27.8 1.0 NE2 A:HIS151 3.3 34.8 1.0 CG A:HIS151 3.4 33.0 1.0 CB A:HIS151 4.0 28.7 1.0 CG A:GLU154 4.2 25.4 1.0 O A:HOH625 4.3 49.0 1.0 CE1 A:HIS151 4.4 34.9 1.0 ND1 A:HIS151 4.5 36.3 1.0 O A:HOH597 4.7 45.0 1.0 CA A:HIS151 4.7 26.9 1.0 CB A:GLU154 5.0 20.5 1.0

C.Szeto, S.Gras. Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 To Be Published.