Cadmium in PDB 7ujz: [T:CD2+/HG2+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle

The structure of [T:CD2+/HG2+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle, PDB code: 7ujz was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.07 / 3.94
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.081, 106.081, 91.646, 90, 90, 120
R / Rfree (%)	21.7 / 23.7

The structure of [T:CD2+/HG2+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle also contains other interesting chemical elements:

Mercury

(Hg)

1 atom

The binding sites of Cadmium atom in the [T:CD2+/HG2+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle (pdb code 7ujz). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the [T:CD2+/HG2+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle, PDB code: 7ujz:

Cadmium binding site 1 out of 1 in the [T:CD2+/HG2+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of [T:CD2+/HG2+:T--pH 11] Metal-Mediated Dna Base Pair in Tensegrity Triangle within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd102 b:151.9 occ:0.81 O4 B:DT4 2.6 222.2 1.0 N6 B:DA3 3.4 184.4 1.0 O4 A:DT12 3.6 202.6 1.0 C4 B:DT4 3.7 229.2 1.0 C6 B:DA3 3.8 185.9 1.0 C7 B:DT4 3.8 186.7 1.0 N7 B:DA3 3.9 176.9 1.0 C5 B:DA3 3.9 182.5 1.0 O4 A:DT11 4.1 205.4 1.0 N6 B:DA5 4.1 261.9 1.0 C5 B:DT4 4.2 214.6 1.0 HG B:HG101 4.4 154.5 0.4 N1 B:DA5 4.6 286.7 1.0 N1 B:DA3 4.6 191.4 1.0 C6 B:DA5 4.6 262.0 1.0 N3 B:DT4 4.8 254.9 1.0 C8 B:DA3 4.9 176.6 1.0 C4 A:DT11 4.9 212.4 1.0 C7 A:DT11 4.9 245.1 1.0 C4 A:DT12 4.9 196.8 1.0 C4 B:DA3 4.9 185.5 1.0

B.Lu, Y.P.Ohayon, R.Sha, K.Woloszyn, L.Rothschild, S.Wind, W.Hendrickson, C.Mao, N.C.Seeman, S.Vecchioni. Crystallographic pH Titration of Silver and Mercury Mediated Dna Base Pairs To Be Published.