Cadmium in PDB 7vio: Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr

The structure of Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr, PDB code: 7vio was solved by C.Lu, X.Peng, B.Maity, N.Ito, S.Abe, J.Wu, T.Ueno, D.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.31 / 1.50
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	182.644, 182.644, 182.644, 90, 90, 90
R / Rfree (%)	17.5 / 19.3

The binding sites of Cadmium atom in the Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr (pdb code 7vio). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr, PDB code: 7vio:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:27.4 occ:0.50 OD1 A:ASP80 2.2 9.4 1.0 CG A:ASP80 3.0 12.5 1.0 OD2 A:ASP80 3.2 18.1 1.0 CB A:ASP80 4.4 11.8 1.0 O A:HOH316 4.4 20.5 1.0

Cadmium binding site 2 out of 3 in the Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:79.1 occ:0.33 OE1 A:GLU130 2.6 18.2 1.0 CD A:GLU130 3.4 17.5 1.0 OE2 A:GLU130 3.5 16.7 1.0 OD1 A:ASP127 4.3 21.0 1.0 CD A:CD204 4.8 40.0 0.1 CG A:GLU130 4.9 13.5 1.0

Cadmium binding site 3 out of 3 in the Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Recombinant Horse Spleen Apo-R168H/L169C-Fr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd204 b:40.0 occ:0.15 O A:HOH322 2.2 28.2 1.0 OD1 A:ASP127 2.7 21.0 1.0 CG A:ASP127 3.8 17.1 1.0 OG A:SER131 4.1 20.7 1.0 OD2 A:ASP127 4.1 18.3 1.0 OE1 A:GLU130 4.5 18.2 1.0 CD A:CD203 4.8 79.1 0.3

C.Lu, B.Maity, X.Peng, N.Ito, S.Abe, X.Sheng, T.Ueno, D.Lu. Design of A Gold Clustering Site in An Engineered Apo-Ferritin Cage Commun Chem V. 5 2022.
ISSN: ESSN 2399-3669
DOI: 10.1038/S42004-022-00651-1