Cadmium in PDB 7vis: Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr

The structure of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr, PDB code: 7vis was solved by C.Lu, X.Peng, B.Maity, N.Ito, S.Abe, T.Ueno, D.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.69 / 1.85
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	182.594, 182.594, 182.594, 90, 90, 90
R / Rfree (%)	16.6 / 19.8

The structure of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Gold	(Au)	7 atoms

The binding sites of Cadmium atom in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr (pdb code 7vis). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr, PDB code: 7vis:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd209 b:20.7 occ:0.50 OD2 A:ASP80 1.6 8.8 1.0 OD1 A:ASP80 2.5 6.5 1.0 CG A:ASP80 2.5 7.9 1.0 CB A:ASP80 4.0 8.5 1.0 O A:HOH347 4.6 15.3 1.0

Cadmium binding site 2 out of 3 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd210 b:13.1 occ:0.10 O A:HOH315 2.1 24.1 1.0 O A:HOH428 2.2 33.2 1.0 O A:HOH309 3.9 29.2 1.0 OE1 A:GLU130 3.9 15.5 1.0 OD1 A:ASP127 4.2 16.4 1.0 OG A:SER131 4.7 22.8 1.0 CB A:GLU130 4.9 13.8 1.0 CD A:GLU130 4.9 16.7 1.0 CD A:CD211 5.0 17.5 0.3

Cadmium binding site 3 out of 3 in the Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Au(200EQ)-Apo-R168H/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd211 b:17.5 occ:0.33 OE1 A:GLU130 2.4 15.5 1.0 OE2 A:GLU130 2.4 19.3 1.0 CD A:GLU130 2.8 16.7 1.0 O A:HOH315 4.2 24.1 1.0 CG A:GLU130 4.3 15.0 1.0 O A:HOH310 4.4 26.9 1.0 CD A:CD210 5.0 13.1 0.1

C.Lu, B.Maity, X.Peng, N.Ito, S.Abe, X.Sheng, T.Ueno, D.Lu. Design of A Gold Clustering Site in An Engineered Apo-Ferritin Cage Commun Chem V. 5 2022.
ISSN: ESSN 2399-3669
DOI: 10.1038/S42004-022-00651-1