Cadmium in PDB 7viu: Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr

The structure of Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr, PDB code: 7viu was solved by C.Lu, X.Peng, B.Maity, N.Ito, S.Abe, T.Ueno, D.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	12.95 / 1.50
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.786, 180.786, 180.786, 90, 90, 90
R / Rfree (%)	15.1 / 16.7

The structure of Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr also contains other interesting chemical elements:

Chlorine	(Cl)	3 atoms
Gold	(Au)	8 atoms

The binding sites of Cadmium atom in the Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr (pdb code 7viu). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr, PDB code: 7viu:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd207 b:18.1 occ:0.15 O A:HOH323 2.2 14.7 1.0 O A:HOH374 2.3 19.3 1.0 O A:HOH335 4.0 21.0 1.0 OE2 A:GLU130 4.2 12.3 1.0 OD1 A:ASP127 4.2 12.7 1.0 OG A:SER131 4.5 20.1 1.0 CB A:GLU130 4.9 11.3 1.0

Cadmium binding site 2 out of 3 in the Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd208 b:10.2 occ:0.50 OD2 A:ASP80 2.2 12.2 1.0 OD1 A:ASP80 2.3 6.7 1.0 CL A:CL217 2.5 8.4 0.5 CG A:ASP80 2.7 9.2 1.0 CB A:ASP80 4.2 8.5 1.0 O A:HOH319 4.3 13.0 1.0 O A:HOH354 4.7 15.0 1.0

Cadmium binding site 3 out of 3 in the Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Au(200EQ)-Apo-R168C/L169C-Rhlfr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd218 b:7.3 occ:0.25 OE1 A:GLU130 2.4 13.5 1.0 OE2 A:GLU130 2.4 12.3 1.0 CD A:GLU130 2.7 11.7 1.0 O A:HOH451 3.9 11.5 1.0 CG A:GLU130 4.2 10.9 1.0 O A:HOH323 4.3 14.7 1.0 O A:HOH308 4.4 18.8 1.0

C.Lu, B.Maity, X.Peng, N.Ito, S.Abe, X.Sheng, T.Ueno, D.Lu. Design of A Gold Clustering Site in An Engineered Apo-Ferritin Cage Commun Chem V. 5 2022.
ISSN: ESSN 2399-3669
DOI: 10.1038/S42004-022-00651-1