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Cadmium in PDB 7xvi: Pathogen Effectors Which Are Essential to Cause Plant Disease By Manipulating Cellular Processes in the Host

Protein crystallography data

The structure of Pathogen Effectors Which Are Essential to Cause Plant Disease By Manipulating Cellular Processes in the Host, PDB code: 7xvi was solved by J.Wang, Y.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.88 / 3.11
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.846, 89.385, 129.367, 90, 90, 90
R / Rfree (%) 24.1 / 27.6

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Pathogen Effectors Which Are Essential to Cause Plant Disease By Manipulating Cellular Processes in the Host (pdb code 7xvi). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Pathogen Effectors Which Are Essential to Cause Plant Disease By Manipulating Cellular Processes in the Host, PDB code: 7xvi:

Cadmium binding site 1 out of 1 in 7xvi

Go back to Cadmium Binding Sites List in 7xvi
Cadmium binding site 1 out of 1 in the Pathogen Effectors Which Are Essential to Cause Plant Disease By Manipulating Cellular Processes in the Host


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Pathogen Effectors Which Are Essential to Cause Plant Disease By Manipulating Cellular Processes in the Host within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd502

b:48.2
occ:1.00
OE2 A:GLU80 2.6 48.5 1.0
OE1 A:GLU80 2.6 51.4 1.0
CD A:GLU80 2.9 53.1 1.0
CG A:GLU80 4.4 48.1 1.0
CB A:THR78 4.8 40.5 1.0
CG2 A:THR78 4.9 38.4 1.0
N A:GLU80 5.0 39.2 1.0

Reference:

H.Li, J.Wang, T.A.Kuan, B.Tang, L.Feng, J.Wang, Z.Cheng, J.Skienar, P.Derbyshire, M.Hulin, Y.Li, Y.Zhai, Y.Hou, F.L.H.Menke, Y.Wang, W.Ma. Articlepathogen Protein Modularity Enables Elaboratemimicry of A Host Phosphatase. Cell(Cambridge,Mass.) 2023.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2023.05.049
Page generated: Fri Jul 19 20:17:34 2024

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