Cadmium in PDB 8cz5: N11 P Domain 2D9 Fab P Complex

The structure of N11 P Domain 2D9 Fab P Complex, PDB code: 8cz5 was solved by M.Leuthold, T.Kilic, G.Hansman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.81 / 2.65
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	92.29, 92.29, 493.07, 90, 90, 120
R / Rfree (%)	19.4 / 22.3

The binding sites of Cadmium atom in the N11 P Domain 2D9 Fab P Complex (pdb code 8cz5). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the N11 P Domain 2D9 Fab P Complex, PDB code: 8cz5:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the N11 P Domain 2D9 Fab P Complex


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of N11 P Domain 2D9 Fab P Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd600 b:101.2 occ:1.00 OD2 A:ASP296 2.7 81.2 1.0 OD1 A:ASP296 2.9 82.7 1.0 OD1 A:ASP325 3.1 94.5 1.0 CG A:ASP296 3.1 78.2 1.0 O A:ACT601 3.7 77.3 1.0 OXT A:ACT601 3.7 79.6 1.0 C A:ACT601 4.2 79.2 1.0 CG A:ASP325 4.2 91.4 1.0 CB A:ASP296 4.6 67.4 1.0 CB A:ASP298 4.6 57.4 1.0 O A:ASP296 4.7 51.2 1.0 CB A:ASP325 4.7 79.8 1.0 CZ2 A:TRP361 4.8 38.1 1.0 CH2 A:TRP361 4.9 34.4 1.0 O A:HOH722 4.9 48.6 1.0 C A:ASP296 4.9 50.5 1.0

Cadmium binding site 2 out of 2 in the N11 P Domain 2D9 Fab P Complex


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of N11 P Domain 2D9 Fab P Complex within 5.0Å range: probe atom residue distance (Å) B Occ L:Cd300 b:53.5 occ:1.00 OXT L:ACT301 2.6 64.5 1.0 NE2 L:HIS189 2.6 57.9 1.0 O L:ACT301 2.7 61.5 1.0 OE1 L:GLU185 2.7 60.4 1.0 OE2 L:GLU185 2.8 49.9 1.0 C L:ACT301 3.0 66.6 1.0 CD L:GLU185 3.1 56.1 1.0 CD2 L:HIS189 3.4 59.0 1.0 CE1 L:HIS189 3.7 58.9 1.0 NH2 L:ARG155 4.0 69.3 1.0 CH3 L:ACT301 4.5 74.1 1.0 CG L:GLU185 4.5 54.2 1.0 CG L:HIS189 4.7 62.1 1.0 ND1 L:HIS189 4.8 62.2 1.0 NH1 L:ARG155 4.9 66.9 1.0 CZ L:ARG155 4.9 67.2 1.0 NE L:ARG188 5.0 64.7 1.0

M.Leuthold, T.Kilic. N11 P Domain - Fab To Be Published.