Atomistry » Cadmium » PDB 7vir-8i6l » 8fu4
Atomistry »
  Cadmium »
    PDB 7vir-8i6l »
      8fu4 »

Cadmium in PDB 8fu4: Hcmv US11 Peptide Binding to Hla-A*02:01

Protein crystallography data

The structure of Hcmv US11 Peptide Binding to Hla-A*02:01, PDB code: 8fu4 was solved by G.M.Watson, R.Berry, D.R.Littler, J.Rossjohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.64 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.874, 79.27, 110.664, 90, 90, 90
R / Rfree (%) 18.1 / 20.4

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Hcmv US11 Peptide Binding to Hla-A*02:01 (pdb code 8fu4). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Hcmv US11 Peptide Binding to Hla-A*02:01, PDB code: 8fu4:

Cadmium binding site 1 out of 1 in 8fu4

Go back to Cadmium Binding Sites List in 8fu4
Cadmium binding site 1 out of 1 in the Hcmv US11 Peptide Binding to Hla-A*02:01


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Hcmv US11 Peptide Binding to Hla-A*02:01 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd302

b:23.6
occ:1.00
OE1 A:GLU154 2.5 22.1 1.0
OE2 A:GLU154 2.5 24.2 1.0
ND1 A:HIS151 2.6 30.8 1.0
CD A:GLU154 2.8 22.6 1.0
CE1 A:HIS151 3.3 29.2 1.0
CG A:HIS151 3.4 29.0 1.0
CB A:HIS151 3.8 27.7 1.0
O A:HOH699 4.1 40.8 1.0
NE2 A:HIS151 4.3 34.7 1.0
CG A:GLU154 4.3 22.9 1.0
CD2 A:HIS151 4.4 30.5 1.0
O A:HOH508 4.7 35.1 1.0
CA A:HIS151 4.8 28.5 1.0
O A:HOH443 4.8 37.8 1.0

Reference:

C.Zimmermann, G.M.Watson, L.Bauersfeld, R.Berry, B.Ciblis, H.Lan, C.Gerke, V.Oberhardt, J.Fuchs, M.Hofmann, C.Freund, J.Rossjohn, F.Momburg, H.Hengel, A.Halenius. Diverse Cytomegalovirus US11 Antagonism and Mhc-A Evasion Strategies Reveal A Tit-For-Tat Coevolutionary Arms Race in Hominids. Proc.Natl.Acad.Sci.Usa V. 121 85121 2024.
ISSN: ESSN 1091-6490
PubMed: 38377192
DOI: 10.1073/PNAS.2315985121
Page generated: Fri Jul 19 20:25:37 2024

Last articles

Zn in 7Z5U
Zn in 7YUJ
Zn in 7Z5A
Zn in 7Z1N
Zn in 7Z16
Zn in 7Z18
Zn in 7Z19
Zn in 7Z17
Zn in 7Z28
Zn in 7Z15
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy