Cadmium in PDB 8i8q: Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius.

The structure of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius., PDB code: 8i8q was solved by B.Maity, J.Tian, S.Abe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.10 / 1.50
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	182.219, 182.219, 182.219, 90, 90, 90
R / Rfree (%)	15.9 / 17.4

The structure of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Cadmium atom in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. (pdb code 8i8q). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 8 binding sites of Cadmium where determined in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius., PDB code: 8i8q:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Cadmium binding site 1 out of 8 in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:10.2 occ:0.10 CD A:CD205 1.7 10.2 0.2 OE1 A:GLU130 2.5 24.1 1.0 OD1 A:ASP127 3.6 14.1 0.5 CD A:GLU130 3.7 23.8 1.0 CD A:CD202 3.7 72.0 0.2 OE2 A:GLU130 4.3 21.4 1.0 CG A:ASP127 4.6 13.5 0.5 CD A:CD204 4.7 14.6 0.2 CB A:ASP127 4.8 11.9 0.5 CG A:GLU130 4.9 18.2 1.0 CA A:ASP127 5.0 10.8 0.5

Cadmium binding site 2 out of 8 in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:72.0 occ:0.20 OD1 A:ASP127 2.4 14.1 0.5 CG A:ASP127 3.6 13.5 0.5 OD1 A:ASP127 3.6 13.8 0.5 CD A:CD201 3.7 10.2 0.1 OD2 A:ASP127 4.2 15.5 0.5 OE1 A:GLU130 4.5 24.1 1.0 OG A:SER131 4.5 22.0 1.0 CD A:CD205 4.8 10.2 0.2 CG A:ASP127 4.9 10.8 0.5 CB A:ASP127 4.9 11.9 0.5

Cadmium binding site 3 out of 8 in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:9.9 occ:0.50 OD2 A:ASP80 2.2 12.1 1.0 OD1 A:ASP80 2.3 6.6 1.0 CL A:CL212 2.5 17.2 1.0 CG A:ASP80 2.7 9.8 1.0 CB A:ASP80 4.2 9.2 1.0 O A:HOH424 4.4 12.4 1.0 O A:HOH364 4.7 14.8 1.0

Cadmium binding site 4 out of 8 in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd204 b:14.6 occ:0.20 O A:HOH502 2.2 20.9 1.0 CD A:CD205 3.6 10.2 0.2 CB A:CYS126 3.7 11.6 1.0 SG A:CYS126 4.2 13.5 1.0 OE2 A:GLU130 4.3 21.4 1.0 O A:HOH511 4.3 23.3 1.0 O A:HOH443 4.3 16.8 1.0 O A:HOH491 4.6 20.9 1.0 CD A:CD201 4.7 10.2 0.1 OE1 A:GLU130 5.0 24.1 1.0 CD A:GLU130 5.0 23.8 1.0

Cadmium binding site 5 out of 8 in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd205 b:10.2 occ:0.20 CD A:CD201 1.7 10.2 0.1 OE1 A:GLU130 2.7 24.1 1.0 CD A:GLU130 3.5 23.8 1.0 CD A:CD204 3.6 14.6 0.2 OD1 A:ASP127 3.7 14.1 0.5 OE2 A:GLU130 3.8 21.4 1.0 CB A:ASP127 3.9 11.9 0.5 CA A:ASP127 4.0 10.8 0.5 N A:ASP127 4.1 10.2 1.0 CA A:ASP127 4.1 10.1 0.5 CG A:ASP127 4.3 13.5 0.5 C A:CYS126 4.4 10.3 1.0 CB A:CYS126 4.5 11.6 1.0 O A:CYS126 4.6 11.2 1.0 CB A:ASP127 4.7 10.0 0.5 CG A:GLU130 4.8 18.2 1.0 CD A:CD202 4.8 72.0 0.2 O A:PRO123 4.9 7.8 1.0

Cadmium binding site 6 out of 8 in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd206 b:26.5 occ:0.20 NE2 A:HIS132 2.2 20.2 1.0 CE1 A:HIS132 2.8 21.2 1.0 CD2 A:HIS132 3.4 18.4 1.0 O A:HOH367 3.8 33.5 1.0 ND1 A:HIS132 4.0 20.4 1.0 NH2 A:ARG64 4.3 31.7 1.0 CG A:HIS132 4.3 15.8 1.0

Cadmium binding site 7 out of 8 in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd207 b:44.4 occ:0.20 O A:HOH409 2.0 31.8 1.0 NE2 A:HIS49 2.4 10.2 0.5 CE1 A:HIS49 3.0 9.4 0.5 OD2 A:ASP174 3.6 66.6 1.0 CD2 A:HIS49 3.7 9.8 0.5 OE2 A:GLU45 3.7 32.8 1.0 CD A:GLU45 3.7 22.2 1.0 CG A:GLU45 3.8 14.9 1.0 O A:HOH355 4.2 20.8 1.0 ND1 A:HIS49 4.2 10.4 0.5 O1 A:EDO214 4.4 40.3 1.0 OE1 A:GLU45 4.4 22.6 1.0 CG A:HIS49 4.6 8.5 0.5 CG A:ASP174 4.6 60.7 1.0 O A:HOH311 4.8 35.8 1.0 O2 A:EDO214 4.9 37.6 1.0 O A:HOH390 4.9 41.9 1.0 OD1 A:ASP174 4.9 58.5 1.0

Cadmium binding site 8 out of 8 in the Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd208 b:33.7 occ:0.20 OE2 A:GLU56 2.0 36.1 1.0 O A:HOH312 2.1 30.4 1.0 OE2 A:GLU60 2.3 25.1 1.0 OE1 A:GLU60 2.9 23.6 1.0 CD A:GLU60 2.9 22.0 1.0 CD A:GLU56 3.1 27.9 1.0 CG A:GLU56 3.6 16.9 1.0 OE1 A:GLU56 4.2 35.3 1.0 CG A:GLU60 4.4 14.2 1.0 CB A:GLU56 4.9 11.3 1.0

B.Maity, J.Tian, S.Abe, T.Ueno. Crystal Structure of Horse Spleen L-Ferritin H114A Mutant at -180DEG Celsius. To Be Published.