Cadmium in PDB 8j0z: Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius.

The structure of Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius., PDB code: 8j0z was solved by B.Maity, J.Tian, S.Abe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.17 / 1.60
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.76, 180.76, 180.76, 90, 90, 90
R / Rfree (%)	16.8 / 20.2

The structure of Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius. also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Cadmium atom in the Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius. (pdb code 8j0z). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius., PDB code: 8j0z:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in the Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd205 b:8.2 occ:0.50 OD1 X:ASP80 2.3 7.7 1.0 OD2 X:ASP80 2.4 8.2 1.0 CL X:CL209 2.5 11.3 1.0 CG X:ASP80 2.7 8.0 1.0 CB X:ASP80 4.2 8.5 1.0 O X:HOH435 4.2 10.7 1.0 O X:HOH338 4.8 14.1 1.0

Cadmium binding site 2 out of 4 in the Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd206 b:21.4 occ:0.15 CD X:CD208 1.8 15.0 0.1 OE1 X:GLU130 2.3 21.8 1.0 CD X:GLU130 3.2 18.9 1.0 OE2 X:GLU130 3.4 18.8 1.0 OD1 X:ASP127 4.1 14.8 0.5 O X:HOH316 4.1 25.7 1.0 CG X:GLU130 4.6 15.4 1.0 CB X:ASP127 4.8 11.4 0.5 CG X:ASP127 4.9 12.9 0.5

Cadmium binding site 3 out of 4 in the Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd207 b:24.1 occ:0.25 NE2 X:HIS132 2.2 21.6 1.0 CE1 X:HIS132 2.8 22.6 1.0 CD2 X:HIS132 3.4 20.0 1.0 O X:HOH491 3.6 29.3 1.0 O X:HOH344 3.8 38.8 1.0 ND1 X:HIS132 4.0 20.7 1.0 NH1 X:ARG64 4.2 31.7 1.0 CG X:HIS132 4.3 17.7 1.0

Cadmium binding site 4 out of 4 in the Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd208 b:15.0 occ:0.15 CD X:CD206 1.8 21.4 0.1 OE1 X:GLU130 2.7 21.8 1.0 OE2 X:GLU130 2.8 18.8 1.0 CD X:GLU130 3.1 18.9 1.0 O X:HOH316 4.2 25.7 1.0 CB X:ASP127 4.4 11.4 0.5 N X:ASP127 4.5 9.7 1.0 CA X:ASP127 4.5 10.4 0.5 CB X:CYS126 4.5 10.2 1.0 OD1 X:ASP127 4.5 14.8 0.5 CA X:ASP127 4.6 9.7 0.5 CG X:GLU130 4.6 15.4 1.0 C X:CYS126 4.7 9.7 1.0 CB X:ASP127 4.9 10.1 0.5 CG X:ASP127 5.0 12.9 0.5

B.Maity, J.Tian, S.Abe, T.Ueno. Crystal Structure of Horse Spleen L-Ferritin at -180DEG Celsius Cooled From -40DEG Celsius. To Be Published.