Cadmium in PDB 8j11: Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius.

The structure of Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius., PDB code: 8j11 was solved by B.Maity, J.Tian, S.Abe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.09 / 1.60
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	182.084, 182.084, 182.084, 90, 90, 90
R / Rfree (%)	15.5 / 18.6

The structure of Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius. also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Cadmium atom in the Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius. (pdb code 8j11). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius., PDB code: 8j11:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in the Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd204 b:15.8 occ:0.50 OD2 X:ASP80 2.0 15.4 1.0 OD1 X:ASP80 2.4 9.8 1.0 CL X:CL208 2.4 37.5 1.0 CG X:ASP80 2.6 13.7 1.0 CB X:ASP80 4.1 13.4 1.0 O X:HOH340 4.4 29.0 1.0 O X:HOH319 4.4 21.7 1.0

Cadmium binding site 2 out of 4 in the Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd205 b:37.9 occ:0.15 OD1 X:ASP127 2.5 17.4 0.5 O X:HOH312 2.6 34.1 1.0 OD1 X:ASP127 3.4 17.3 0.5 CG X:ASP127 3.7 18.1 0.5 CD X:CD206 4.1 56.1 0.2 OG X:SER131 4.1 29.6 1.0 OE1 X:GLU130 4.2 24.1 1.0 OD2 X:ASP127 4.2 18.4 0.5 CG X:ASP127 4.6 14.2 0.5 CB X:ASP127 4.9 15.3 0.5

Cadmium binding site 3 out of 4 in the Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd206 b:56.1 occ:0.25 O X:HOH363 2.0 35.4 1.0 OE1 X:GLU130 2.6 24.1 1.0 CD X:GLU130 3.4 18.6 1.0 OE2 X:GLU130 3.6 16.6 1.0 OD1 X:ASP127 4.0 17.4 0.5 CD X:CD205 4.1 37.9 0.1 CG X:GLU130 4.8 16.8 1.0 CG X:ASP127 4.8 18.1 0.5 CB X:ASP127 4.8 15.3 0.5

Cadmium binding site 4 out of 4 in the Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd207 b:44.0 occ:0.20 O X:HOH422 2.1 40.9 1.0 NE2 X:HIS132 2.6 32.2 1.0 CE1 X:HIS132 3.5 36.0 1.0 CD2 X:HIS132 3.6 29.9 1.0 O X:HOH305 4.6 22.5 1.0 ND1 X:HIS132 4.7 31.6 1.0 CG X:HIS132 4.8 25.4 1.0 CD1 X:PHE128 4.8 17.9 1.0 OD2 X:ASP127 4.9 16.1 0.5

B.Maity, J.Tian, S.Abe, T.Ueno. Crystal Structure of Horse Spleen L-Ferritin at 0DEG Celsius. To Be Published.